GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:03:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene25938_XinShao mRNA sequence.
JR619480.1:390-409
CGTCAAAACATTCAGAGCCGCGCCCTTCTG390CTACCCTCAGCTGAACCCAATCTGTCAAATCAACCCCATTTCCTTCACCT
Geranium rotundifolium genome assembly, chromosome: 9.
OY987319.1:3588523-3588542
TTTAATCATCTACAGACTTTGCACTACATT3588523CTACCCTCAGCTGAACCCAACCCAACTGCTCAGTTGGTCAAGGTGATTAA
TSA: Pyrus communis mRNA, contig: lc31862.
FX639931.1:227-246
AGGTGAAGGAAATGGGGTTGATTTGACAGA227TTGGGTTCAGCTGAGGGTAGCAGAAGGGCGCGGCTCTGAATGTTTTGACG
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:5765309-5765328
AGGTGAAGGAAATGGGGTTGATTTGACAGA5765309TTGGGTTCAGCTGAGGGTAGCAGAAGGGCGCGGCTCTGAATGTTTTGACG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTACCCTCAGCTGAACCCAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTACCCTCAGCTGAACCCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.112 | 0.104 | search_plus_done; http://172.18.8.135:50400/match?q=CTACCCTCAGCTGAACCCAA&k=0&no_gap=0&offset=0&limit=50
0.130 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGGTTCAGCTGAGGGTAG&k=0&no_gap=0&offset=0&limit=48
0.131 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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