GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 05:06:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Medicago truncatula EST, clone mtaehac110006c08.
AJ548153.1:299-321
CAACGAGTTTTTCTGGACTAGTTTTGGCTC299CTAGATTTTTCCATTGCTCTTGGAGCTAGCCCAATTGCATCAGAGCCTTTCAT
EST637380 MTUS Medicago truncatula cDNA clone MTUS-16D1, mRNA sequence.
CA919662.1:308-330
CAACGAGTTTTTCTGGACTAGTTTTGGCTC308CTAGATTTTTCCATTGCTCTTGGAGCTAGCCCAATTGCATCAGAGCCTTTCAT
mte1-11N6RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula.
CR295571.1:47-69
CAACGAGTTTTTCTGGACTAGTTTTGGCTC47CTAGATTTTTCCATTGCTCTTGGAGCTGCAAACAAGATAATTCAGAACATACT
Sequence 814 from Patent WO2010034681.
HC500839.1:1063-1085
ATGAAAGGCTCTGATGCAATTGGGCTAGCT1063CCAAGAGCAATGGAAAAATCTAGGAGCCAAAACTAGTCCAGAAAAACTCGTTG
Sequence 814 from patent US 9062322.
HK747660.1:1063-1085
ATGAAAGGCTCTGATGCAATTGGGCTAGCT1063CCAAGAGCAATGGAAAAATCTAGGAGCCAAAACTAGTCCAGAAAAACTCGTTG
Sequence 814 from Patent EP2910639.
JE863673.1:1063-1085
ATGAAAGGCTCTGATGCAATTGGGCTAGCT1063CCAAGAGCAATGGAAAAATCTAGGAGCCAAAACTAGTCCAGAAAAACTCGTTG
Sequence 214 from patent US 11352637.
OO264688.1:945-967
CTCTGATGCAATTGGGCTAGGTATGAAACT945CCAAGAGCAATGGAAAAATCTAGGAGCCAAAACTAGTCCAGAAAAACTCGTTG
Medicago truncatula EST, clone mt--abc955102h01.
AJ496990.1:146-168
ATGAAAGGCTCTGATGCAATTGGGCTAGCT146CCAAGAGCAATGGAAAAATCTAGGAGCCAAAACTAGTCCAGAAAAACTCGTTG
EST529305 GPOD Medicago truncatula cDNA clone pGPOD-1C10 5' end, mRNA sequence.
BI307895.1:693-715
ATGAAAGGCTCTGATGCAATTGGGCTAGCT693CCAAGAGCAATGGAAAAATCTAGGAGCCCAAACTAGTCCAGAAAAACTCGTTG
EST593718 BNIR Medicago truncatula/Meloidogyne incognita mixed EST library cDNA clone pBNIR-28O1, mRNA sequence.
BM815624.1:591-613
ATGAAAGGCTCTGATGCAATTGGGCTAGCT591CCAAGAGCAATGGAAAAATCTAGGAGCCAAAACTAGTCCAGAAAAACTCGTTG
MEUA381TF JCVI-MT2 Medicago truncatula cDNA 5', mRNA sequence.
GE343662.1:335-357
ATGAAAGGCTCTGATGCAATTGGGCTAGCT335CCAAGAGCAATGGAAAAATCTAGGAGCCAAAACTAGTCCAGAAAAACTCGTTG
Medicago truncatula clone mth2-31d24, complete sequence.
AC138130.9:35412-35434
AGTATGTTCTGAATTATCTTGTTTGCAGCT35412CCAAGAGCAATGGAAAAATCTAGGAGCCAAAACTAGTCCAGAAAAACTCGTTG
Medicago truncatula clone MTYF9_FA_FB_FC1G-I-11 unknown mRNA.
BT052106.1:988-1010
ATGAAAGGCTCTGATGCAATTGGGCTAGCT988CCAAGAGCAATGGAAAAATCTAGGAGCCAAAACTAGTCCAGAAAAACTCGTTG
Medicago truncatula clone JCVI-FLMt-16L23 unknown mRNA.
BT141544.1:986-1008
ATGAAAGGCTTTGATGCAATTGGGCTAGCT986CCAAGAGCAATGGAAAAATCTAGGAGCCAAAACTAGTCCAGAAAAACTCGTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTAGATTTTTCCATTGCTCTTGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTAGATTTTTCCATTGCTCTTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.426 | 0.417 | search_plus_done; http://172.18.8.135:50400/match?q=CTAGATTTTTCCATTGCTCTTGG&k=0&no_gap=0&offset=0&limit=50
0.816 | 0.391 | search_minus_done; http://172.18.8.135:50400/match?q=CCAAGAGCAATGGAAAAATCTAG&k=0&no_gap=0&offset=0&limit=47
0.824 | 0.007 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).