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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:15:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143372.1:36640259-36640282
CTGCATCAGAGTCGCCATTGTTGAAGCACG36640259CTAGCTCCGAAACAGAGGAAAGGTTTAGTCGGCCTGTAATGGATTCTGCTCAAA
Malus hybrid cultivar cultivar SH6 chromosome 15.
CP143389.1:31708949-31708972
CTGCATCAGAGTCGCCATTGTTGAAGCACG31708949CTAGCTCCGAAACAGAGGAAAGGTTTAGTCGGACTGTAATGGATTCTGCTCAAA
Malus sylvestris genome assembly, chromosome: 15.
OU696517.1:35635722-35635745
CTGCATCAGAGTCGCCATTGTTGAAGCACG35635722CTAGCTCCGAAACAGAGGAAAGGTTTAGTCGGCCTGTAATGGATTCTGCTCAAA
Malus domestica genome assembly, chromosome: 15.
OU696691.1:36864268-36864291
CTGCATCAGAGTCGCCATTGTTGAAGCACG36864268CTAGCTCCGAAACAGAGGAAAGGTTTAGTCGGCCTGTAATGGATTCTGCTCAAA
Malus domestica genome assembly, chromosome: 15.
OU744556.1:36647161-36647184
CTGCATCAGAGTCGCCATTGTTGAAGCACG36647161CTAGCTCCGAAACAGAGGAAAGGTTTAGTCGGCCTGTAATGGATTCTGCTCAAA
Malus domestica genome assembly, chromosome: 15.
OU744967.1:36774021-36774044
CTGCATCAGAGTCGCCATTGTTGAAGCACG36774021CTAGCTCCGAAACAGAGGAAAGGTTTAGTCGGCCTGTAATGGATTCTGCTCAAA
Malus domestica genome assembly, chromosome: 15.
OU745005.1:36407735-36407758
CTGCATCAGAGTCGCCATTGTTGAAGCACG36407735CTAGCTCCGAAACAGAGGAAAGGTTTAATCGGCCTGTAATGGATTCTGCTCAAA
Pyrus communis genome assembly, chromosome: 1.
OY757068.1:26400421-26400444
CTGCATCAGAGTCGCCATTGTTGAAGCACG26400421CTAGCTCCGAAACAGAGGAAAGGTTTAGTTGGCCTGTAATGGATTCTGCTCAAA
Sequence 7776 from patent US 10766935.
MV651171.1:36-59
TTTGAGCAGAATCCATTACAGGCCGACTAA36ACCTTTCCTCTGTTTCGGAGCTAGCGTGCTTCAACAATGGCGACTCTGATGCAG
Sequence 7776 from patent US 11566053.
OS274650.1:36-59
TTTGAGCAGAATCCATTACAGGCCGACTAA36ACCTTTCCTCTGTTTCGGAGCTAGCGTGCTTCAACAATGGCGACTCTGATGCAG
010625AAYA003441HT (AAYA) Royal Gala 126 DAFB fruit cortex Malus domestica cDNA clone AAYA003441, mRNA sequence.
CN894658.1:36-59
TTTGAGCAGAATCCATTACAGGCCGACTAA36ACCTTTCCTCTGTTTCGGAGCTAGCGTGCTTCAACAATGGCGACTCTGATGCAG
010626AAYA004049HT (AAYA) Royal Gala 126 DAFB fruit cortex Malus domestica cDNA clone AAYA004049, mRNA sequence.
CN894912.1:17-40
CACGACGGCCGACTAA17ACCTTTCCTCTGTTTCGGAGCTAGCGTGCTTCAACAATGGCGACTCTGATGCAG
TSA: Pyrus x bretschneideri Unigene54202_XinShao mRNA sequence.
JR643686.1:94-117
TTTGAGCAGAATCCATTACAGGCCAACTAA94ACCTTTCCTCTGTTTCGGAGCTAGCGTGCTTCAACAATGGCGACTCTGATGCAG
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141924.1:18556322-18556345
TTTGAGCAGAATCCATTACAGGCCGACTAA18556322ACCTTTCCTCTGTTTCGGAGCTAGTGTGCTTCAACAATGGCGACTCTGATGCAG
Malus hybrid cultivar cultivar Flame chromosome 15.
CP141941.1:19728439-19728462
TTTGAGCAGAATCCATTACAGGCCGACTAA19728439ACCTTTCCTCTGTTTCGGAGCTAGCGTGCTTCAACAATGGCGACTCTGATGCAG
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141967.1:17909868-17909891
TTTGAGCAGAATCCATTACAGGCCGACTAA17909868ACCTTTCCTCTGTTTCGGAGCTAGTGTGCTTCAACAATGGCGACTCTGATGCAG
Malus hybrid cultivar cultivar Royalty chromosome 15.
CP141984.1:18671999-18672022
TTTGAGCAGAATCCATTACAGGCCGACTAA18671999ACCTTTCCTCTGTTTCGGAGCTAGTGTGCTTCAACAATGGCGACTCTGATGCAG
Malus x robusta genome assembly, chromosome: 1.
OY720325.1:18317853-18317876
TTTGAGCAGAATCCATTACAGGCCGACTAA18317853ACCTTTCCTCTGTTTCGGAGCTAGTGTGCTTCAACAATGGCGACTCTGATGCAG
Crataegus laevigata genome assembly, chromosome: 1.
OY756938.1:18635257-18635280
TTTGAGCAGAATCCATTACAGGCCGACTAA18635257ACCTTTCCTCTGTTTCGGAGCTAGCGTGCTTCAACAATGGCGACTCTGATGCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTAGCTCCGAAACAGAGGAAAGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTAGCTCCGAAACAGAGGAAAGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.183 | 0.174 | search_plus_done; http://172.18.8.135:50400/match?q=CTAGCTCCGAAACAGAGGAAAGGT&k=0&no_gap=0&offset=0&limit=50
0.503 | 0.319 | search_minus_done; http://172.18.8.135:50400/match?q=ACCTTTCCTCTGTTTCGGAGCTAG&k=0&no_gap=0&offset=0&limit=42
0.510 | 0.007 | cgi_end;

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