GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 12:59:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Mesembryanthemum crystallinum mRNA, contig: Mcr004562.001.
FX897300.1:20-39
TCCAAAATAAGTTCTACGG20CTATCAAACGGCAAAGATGTCGACGGCGAGATTCCTTTTCGCAAATGGCG
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:12179805-12179824
ATGTCTGTTTAAGGAGATAGAAACCGATAT12179805CTATCAAACGGCAAAGATGTTTGTCAGGAAACATAAACTTTTAAGAACTT
Brassica napus genome assembly, chromosome: A05.
HG994359.1:12160212-12160231
ATGTCTGTTTAAGGAGATAGAAACCGATAT12160212CTATCAAACGGCAAAGATGTTTGTCAGGAAACATAAACTTTTAAGAACTT
Brassica rapa genome, scaffold: A05.
LR031570.1:17916063-17916082
ATGTCTGTTTAAGGAGATAGAAACCGATAT17916063CTATCAAACGGCAAAGATGTTTGTCAGGAAACATAAACTTTTAAGAACTT
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:12006176-12006195
ATGTCTGTTTAAGGAGATAGAAACCGATAT12006176CTATCAAACGGCAAAGATGTTTGTCAGGAAACATAAACTTTTAAGAACTT
Aegilops longissima genome assembly, chromosome: 6S.
LR881074.1:42245401-42245420
AACATTCTTATTCATTCTTGTCCAGAGTTG42245401ACATCTTTGCCGTTTGATAGGCTCCACGGTTTCTCTTGTTTGGAGGAGAT
Azorinus chamasolen genome assembly, chromosome: 7.
OY755241.1:40007048-40007067
TCACCATTTCTAGTTGTAGATTATTCGTTA40007048ACATCTTTGCCGTTTGATAGGGTCTGCGCTGTTTGCAAATGGAATGAAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTATCAAACGGCAAAGATGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTATCAAACGGCAAAGATGT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.127 | 0.117 | search_plus_done; http://172.18.8.135:50400/match?q=CTATCAAACGGCAAAGATGT&k=0&no_gap=0&offset=0&limit=50
0.146 | 0.019 | search_minus_done; http://172.18.8.135:50400/match?q=ACATCTTTGCCGTTTGATAG&k=0&no_gap=0&offset=0&limit=45
0.148 | 0.001 | cgi_end;

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