GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 21:33:17, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Salmo trutta genome assembly, chromosome: 28.
LR584422.1:31700624-31700643
TACTCTCCCGGACGCCTCCGAGCCCTCCAG31700624CTATCCCTTCCACCACATGCAAACGCCCCCCCCTCCCTCTCTCCCTCCAT
JP 2010088432-A/14683: GENETIC POLYMORPHISMS FOR EXAMINING EFFECTIVENESS OR ADVERSE EFFECTS OF TREATMENT USING TNF INHIBITORS, AND USE THEREOF.
HV802675.1:209626-209645
TGTTCTTAGGGCAGTGCCTAGTAGCATCTG209626CTATCCCTTCCACCACATGCCATTTGCCAGAATTTAGTTGTTATTCCCTA
Arachis hypogaea DNA, clone: 8iHA03P03, cultivar: YI-0311.
DE998525.1:24-43
TATATATATATATATTAGTTAGC24CTATCCCTTCCACCACATGCAACAAAAATACAACTGATCTTAGTATTTAG
Arachis hypogaea cultivar Shitouqi chromosome A04.
CP030986.1:116769258-116769277
TGGTTGATATATATATATATATTAGTTAGC116769258CTATCCCTTCCACCACATGCAACAAAAATACAACTGATCTTAGTATTTAG
Homo sapiens BAC clone RP11-150O2 from 2, complete sequence.
AC008273.2:102848-102867
TAGGGAATAACAACTAAATTCTGGCAAATG102848GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Homo sapiens DNA, chromosome 2, nearly complete genome.
AP023462.1:225735326-225735345
TAGGGAATAACAACTAAATTCTGGCAAATG225735326GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Homo sapiens isolate CHM13 chromosome 2.
CP068276.2:229987490-229987509
TAGGGAATAACAACTAAATTCTGGCAAATG229987490GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Homo sapiens isolate NA24385 chromosome 2.
CP139519.1:229409552-229409571
TAGGGAATAACAACTAAATTCTGGCAAATG229409552GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Homo sapiens isolate NA24385 chromosome 2.
CP139542.1:229166208-229166227
TAGGGAATAACAACTAAATTCTGGCAAATG229166208GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Sequence 214 from patent US 10240205.
MM808569.1:147298-147317
TAGGGAATAACAACTAAATTCTGGCAAATG147298GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Sequence 2584 from patent US 10407724.
MO368043.1:147299-147318
TAGGGAATAACAACTAAATTCTGGCAAATG147299GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Sequence 214 from patent US 10544463.
MO748443.1:147298-147317
TAGGGAATAACAACTAAATTCTGGCAAATG147298GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Sequence 214 from patent US 10563264.
MO893299.1:147298-147317
TAGGGAATAACAACTAAATTCTGGCAAATG147298GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Sequence 214 from patent US 10941448.
MX427554.1:147298-147317
TAGGGAATAACAACTAAATTCTGGCAAATG147298GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Sequence 214 from patent US 10961585.
MX517394.1:147298-147317
TAGGGAATAACAACTAAATTCTGGCAAATG147298GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Sequence 2584 from patent US 11174516.
MY708398.1:147299-147318
TAGGGAATAACAACTAAATTCTGGCAAATG147299GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Eukaryotic synthetic construct chromosome 2.
CP034498.1:230359642-230359661
TAGGGAATAACAACTAAATTCTGGCAAATG230359642GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Eukaryotic synthetic construct chromosome 2.
CP034523.1:230359642-230359661
TAGGGAATAACAACTAAATTCTGGCAAATG230359642GCATGTGGTGGAAGGGATAGCAGATGCTACTAGGCACTGCCCTAAGAACA
Arachis hypogaea DNA, clone: 8iSS01H01, cultivar: YI-0311.
DE998858.1:404-423
CTAAATACTAAGATCAGTTGTATTTTTGTT404GCATGTGGTGGAAGGGATAGGCTAACTAATATATATATATATATCAACCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTATCCCTTCCACCACATGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTATCCCTTCCACCACATGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.174 | 0.166 | search_plus_done; http://172.18.8.135:50400/match?q=CTATCCCTTCCACCACATGC&k=0&no_gap=0&offset=0&limit=50
0.598 | 0.423 | search_minus_done; http://172.18.8.135:50400/match?q=GCATGTGGTGGAAGGGATAG&k=0&no_gap=0&offset=0&limit=46
0.608 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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