GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:22:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Royalty chromosome 3.
CP141955.1:20793876-20793898
GACCAAGGCCTTTGATGTGGGTGTGAGTGG20793876CTATGCGCTGCTTCTTGGTAGTCGACTGAACCTCTTCTATCCTCACCTTGTCC
Malus hybrid cultivar cultivar Royalty chromosome 3.
CP141972.1:21653754-21653776
GACCAAGGCCTTTGATGTGGGTGTGAGTGG21653754CTATGCGCTGCTTCTTGGTAGTCGACTGAACCTCTTCTATCCTCACCTTGTCC
Crataegus laevigata genome assembly, chromosome: 9.
OY756946.1:21563232-21563254
GACCAAGGCCTTTTATGTGGGTGTGAGTGG21563232CTATGCGCTGCTTCTTGGTAGTCGACTGAACCTCTTCTATCCTCACCTTGTCC
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH023_05323m, 5' end sequence.
AB450706.1:130-152
GGACAAGGTGAGGATAGAAGAGGTTCAGTC130GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010501AASA009467HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA009467, mRNA sequence.
CN881591.1:142-164
GGACAAGGTGAGGATAGAAGAGGTTCAGTC142GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010831ABDA001099HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA001099, mRNA sequence.
CN904130.1:133-155
GGACAAGGTGAGGATAGAAGAGGTTCAGTC133GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010831ABDA001127HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA001127, mRNA sequence.
CN904149.1:133-155
GGACAAGGTGAGGATAGAAGAGGTTCAGTC133GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010831ABDA001239HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA001239, mRNA sequence.
CN904201.1:133-155
GGACAAGGTGAGGATAGAAGAGGTTCAGTC133GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010831ABDA001463HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA001463, mRNA sequence.
CN904323.1:133-155
GGACAAGGTGAGGATAGAAGAGGTTCAGTC133GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010831ABDA001581HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA001581, mRNA sequence.
CN904387.1:133-155
GGACAAGGTGAGGATAGAAGAGGTTCAGTC133GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010831ABDA001654HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA001654, mRNA sequence.
CN904425.1:133-155
GGACAAGGTGAGGATAGAAGAGGTTCAGTC133GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010928ABDA003106HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA003106, mRNA sequence.
CN905186.1:133-155
GGACAAGGTGAGGATAGAAGAGGTTCAGTC133GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010928ABDA003123HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA003123, mRNA sequence.
CN905195.1:133-155
GGACAAGGTGAGGATAGAAGAGGTTCAGTC133GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010929ABDA004532HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA004532, mRNA sequence.
CN905761.1:133-155
GGACAAGGTGAGGATAGAAGAGGTTCAGTC133GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010929ABDA004739HT (ABDA) Royal Gala fruit stored for 24 hours under low oxygen/high CO2 Malus domestica cDNA clone ABDA004739, mRNA sequence.
CN905812.1:133-155
GGACAAGGTGAGGATAGAAGAGGTTCAGTC133GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
000514AENA001846HT (AENA) Northern Spy expanding leaf Malus domestica cDNA clone AENA001846, mRNA sequence.
CN925743.1:63-85
GGACAAGGTGAGGATAGAAGAGGTTCAGTC63GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010914AVBC013084PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC013084, mRNA sequence.
CN941038.1:124-146
GGACAAGGTGAGGATAGAAGAGGTTCAGTC124GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
010917AVBC042048PG (AVBC) Royal Gala young shoot Malus domestica cDNA clone AVBC042048, mRNA sequence.
CN941940.1:133-155
GGACAAGGTGAGGATAGAAGAGGTTCAGTC133GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Mdfwg2103A11.g1 Apple_EST_Mdfwg Malus domestica cDNA 5' similar to emb|CAB76908.1| putative Ruv DNA-helicase [Cicer arietinum], mRNA sequence.
GO504140.1:58-80
GGACAAGGTGAGGATAGAAGAGGTTCAGTC58GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCTTAGGCCTTGGTC
Mdfwb2098K07.g2 Apple_EST_Mdfwb Malus domestica cDNA 5' similar to emb|CAB76908.1| putative Ruv DNA-helicase [Cicer arietinum], mRNA sequence.
GO508559.1:145-167
GGACAAGGTGAGGATAGAAGAGGTTCAGTC145GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Mdfws2072A03.g1 Apple_EST_Mdfws Malus domestica cDNA 5' similar to emb|CAB76908.1| putative Ruv DNA-helicase [Cicer arietinum], mRNA sequence.
GO510552.1:64-86
GGACAAGGTGAGGATAGAAGAGGTTCAGTC64GACTACCAAGAAGCAGCGCATAGCCACTCACACCCTCATCAAAGGCCTTGGTC
Pyrus pyrifolia mRNA, clone: NFR3_27_69, 5' end sequence, expressed in fruit.
HX753489.1:186-208
GGACAAGGTGAGGATAGAAGAGGTTCAGTC186GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Pyrus pyrifolia mRNA, clone: NLE2_11_23, 5' end sequence, expressed in leaf.
HX767565.1:130-152
GGACAAGGTGAGGATAGAAGAGGTTCAGTC130GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Pyrus pyrifolia mRNA, clone: NLE2_11_75, 5' end sequence, expressed in leaf.
HX767615.1:130-152
GGACAAGGTGAGGATAGAAGAGGTTCAGTC130GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Malus hybrid cultivar cultivar Flame chromosome 3.
CP141912.1:16512859-16512881
GGACAAGGTGAGGATAGAAGAGGTTCAGTC16512859GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Malus hybrid cultivar cultivar Flame chromosome 3.
CP141929.1:16985484-16985506
GGACAAGGTGAGGATAGAAGAGGTTCAGTC16985484GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143360.1:15795187-15795209
GGACAAGGTGAGGATAGAAGAGGTTCAGTC15795187GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143377.1:15090339-15090361
GGACAAGGTGAGGATAGAAGAGGTTCAGTC15090339GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Malus sylvestris genome assembly, chromosome: 3.
OU696505.1:16581394-16581416
GGACAAGGTGAGGATAGAAGAGGTTCAGTC16581394GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Malus domestica genome assembly, chromosome: 3.
OU696679.1:16312332-16312354
GGACAAGGTGAGGATAGAAGAGGTTCAGTC16312332GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Malus domestica genome assembly, chromosome: 3.
OU744544.1:16687018-16687040
GGACAAGGTGAGGATAGAAGAGGTTCAGTC16687018GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Malus domestica genome assembly, chromosome: 3.
OU744955.1:16096892-16096914
GGACAAGGTGAGGATAGAAGAGGTTCAGTC16096892GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Malus domestica genome assembly, chromosome: 3.
OU744993.1:16741646-16741668
GGACAAGGTGAGGATAGAAGAGGTTCAGTC16741646GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Malus x robusta genome assembly, chromosome: 6.
OY720330.1:16375453-16375475
GGACAAGGTGAGGATAGAAGAGGTTCAGTC16375453GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC
Pyrus communis genome assembly, chromosome: 14.
OY757081.1:12358028-12358050
GGACAAGGTGAGGATAGAAGAGGTTCAGTC12358028GACTACCAAGAAGCAGCGCATAGCCACTCACACCCACATCAAAGGCCTTGGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTATGCGCTGCTTCTTGGTAGTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTATGCGCTGCTTCTTGGTAGTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.160 | 0.151 | search_plus_done; http://172.18.8.135:50400/match?q=CTATGCGCTGCTTCTTGGTAGTC&k=0&no_gap=0&offset=0&limit=50
1.512 | 1.352 | search_minus_done; http://172.18.8.135:50400/match?q=GACTACCAAGAAGCAGCGCATAG&k=0&no_gap=0&offset=0&limit=47
1.533 | 0.021 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).