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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:03:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

COT_FE_D01 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to unknown, mRNA sequence.
DT052602.1:314-333
TAATTCCCGGGAACTCCGTATGCAGTGCCA314CTATTACCTCCGCCGTAGTGATCTAGGTTCCTACCGACTGAACCCTCCCT
COT_FE_G11 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (NM_115713) DEAD/DEAH box RNA helicase protein, putative; protein id: At3g58510.1, supported by cD
DT052635.1:313-332
TAATTCCCGGGAACTCCGTATGCAGTGCCA313CTATTACCTCCGCCGTAGTGATCTAGGTTCCTACCGACTGAACCCTCCCT
COT_FG_C08 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to (AL137082) ATP-dependent RNA helicase-like protein [Arabidopsis thaliana], mRNA sequence.
DT052751.1:315-334
TAATTCCCGGGAACTCCGTATGCAGTGCCA315CTATTACCTCCGCCGTAGTGATCTAGGTTCCTACCGACTGAACCCTCCCT
COT_FG_H07 Fiber and Ovule of Xu-142 Lambda Zap Express Library Gossypium hirsutum cDNA 3' similar to unknown, mRNA sequence.
DT052786.1:347-366
TAATTCCCGGGAACTCCGTATGCAGTGCCA347CTATTACCTCCGCCGTAGTGATCTAACAAAATATATAA
GH_CHX18E04.f GH_CHX Gossypium hirsutum cDNA clone GH_CHX18E04 5', mRNA sequence.
DT466001.1:169-188
TAATTCCCGGGAAATCCATATGCAGTGCCA169CTATTACCTCCGCCGTAGTGATCTAGGTTCCTACCAACTGAACCCTCCCT
B12_408540.24.S1103293663.anther-SP1176 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK696963.1:386-405
TAATTCCCGGGAACTCCGTATGCAGTGCCA386CTATTACCTCCGCCGTAGTGATCTAGGTTCCTACCGACTGAACCCTCCCT
Gossypium raimondii isolate D5-4 chromosome D5_01.
CP032553.1:52983321-52983340
TAATTCCCAGGAACTCCGTATGCAGTGCCA52983321CTATTACCTCCGCCGTAGTGATCTAGGTTCCTACCGACTGAACCCTCCCT
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:121361232-121361251
TAATTCCCGGGAAATCCATATGCAGTGCCA121361232CTATTACCTCCGCCGTAGTGATCTAGGTTCCTACCAACTGAACCCTCCCT
Epinotia ramella genome assembly, chromosome: Z.
OX388200.1:28891680-28891699
CTGGACGCAGAGCCTGGCGCTATTGCGCAT28891680CTATTACCTCCGCCGTAGTGGAATCATGCAGGGAGTCGGGGCAAGCCCTG
Sequence 19945 from patent US 7557201.
GP488948.1:248-267
AGGGAGGGTTCAGTCGGTAGGAACCTAGAT248CACTACGGCGGAGGTAATAGTGGCACTGCATACGGAGTTCCCGGGAATTA
GR__Eb01M14.f GR__Eb Gossypium raimondii cDNA clone GR__Eb01M14 5', mRNA sequence.
CO117778.1:684-703
AGGGAGGGTTCAGTCGGTAGGAACCTAGAT684CACTACGGCGGAGGTAATAGTGGCACTGCATACGGAGTTCCTGGGAATTA
UFL_252_72 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES816004.1:185-204
AGGGAGGGTTCAGTTGGTAGGAACCTAGAT185CACTACGGCGGAGGTAATAGTGGCACTGCATATGGATTTCCCGGGAATTA
D03-16-D03 Gossypium barbadense L. line Hai7124 -3 to 5 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK794582.1:540-559
AGGGAGGGTTCAGTCGGTAGGAACCTAGAT540CACTACGGCGGAGGTAATAGTGGCACTGCATACGGAGTTCCCGGGAATTA
Gossypium turneri isolate D10-2 chromosome D10_01.
CP032571.1:3610492-3610511
AGGGAGGGTTCAGTCGGTAGGAACCTAGAT3610492CACTACGGCGGAGGTAATAGTGGCACTGCATACGGAGTTCCCGGGAATTA
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:4396813-4396832
AGGGAGGGTTCAGTTGGTAGGAACCTAGAT4396813CACTACGGCGGAGGTAATAGTGGCACTGCATATGGATTTCCCGGGAATTA
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:5802853-5802872
AGGGATGGTTCAGTCGGTAGGAACCTAGAT5802853CACTACGGCGGAGGTAATAGTGGCACTGCATACGGAGTTCCCGGGAATTA
Gossypium hirsutum clone NBRI_TRANS-639 microsatellite sequence.
JX964370.1:924-943
AGGGAGGGTTCAGTTGGTAGGAACCTAGAT924CACTACGGCGGAGGTAATAGTGGCACTGCATATGGATTTCCCGGGAATTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTATTACCTCCGCCGTAGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTATTACCTCCGCCGTAGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.432 | 0.423 | search_plus_done; http://172.18.8.135:50400/match?q=CTATTACCTCCGCCGTAGTG&k=0&no_gap=0&offset=0&limit=50
0.721 | 0.290 | search_minus_done; http://172.18.8.135:50400/match?q=CACTACGGCGGAGGTAATAG&k=0&no_gap=0&offset=0&limit=41
0.727 | 0.005 | cgi_end;

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