GGGenome | Results

2025-04-08 19:25:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

24-L105761-1033-034-O05-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-034-O05 5', genomic survey sequence.
JY303377.1:435-456

AAAATCCAAATTTTCTTTCAATATTTTAGA435CTATTTCGCTATGTTCTCTTTCCTAACCCATAACATATATTCGGATGGAAAC

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392556.1:27834943-27834964

AAAATCCAAATTTTCTTTCAATATTTTAGA27834943CTATTTCGCTATGTTCTCTTTCCTAACCCATAACATATATTCGGATGGAAAC

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392547.1:28274230-28274251

GTTTCCATCCGAATATATGTTATGGGTTAG28274230GAAAGAGAACATAGCGAAATAGTCTAAAATATTGAAAGAAAATTTGGATTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.147 | 0.139 | search_plus_done; http://172.18.8.135:50400/match?q=CTATTTCGCTATGTTCTCTTTC&k=0&no_gap=0&offset=0&limit=50
0.174 | 0.026 | search_minus_done; http://172.18.8.135:50400/match?q=GAAAGAGAACATAGCGAAATAG&k=0&no_gap=0&offset=0&limit=48
0.174 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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