GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 15:51:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Larimichthys crocea genome assembly, chromosome: I.
LT972175.1:16338825-16338844
TATGGAGGCCTCTAGGGAGGAGCGGGCCGC16338825CTCACACTTCTGCAATGCCACCTATACTGGCCCTGGCACTGCCCCTGCAC
Sequence 978 from patent US 7345217.
EA483383.1:145-164
AGGAAAAAAAAAATACTATGACAAACTATC145CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Sequence 477 from patent US 7511190.
GP291281.1:145-164
AGGAAAAAAAAAATACTATGACAAACTATC145CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Sequence 477 from patent US 7659446.
GV640372.1:145-164
AGGAAAAAAAAAATACTATGACAAACTATC145CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Sequence 5485 from patent US 7960612.
GY263532.1:101-120
AAGGAAAAAAAAATACTATGACAAACTATC101CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Sequence 6535 from patent US 8030546.
GY458760.1:101-120
AAGGAAAAAAAAATACTATGACAAACTATC101CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Sequence 477 from patent US 8110725.
GZ149814.1:145-164
AGGAAAAAAAAAATACTATGACAAACTATC145CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Sequence 477 from patent US 8426678.
GZ834022.1:145-164
AGGAAAAAAAAAATACTATGACAAACTATC145CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Sequence 477 from patent US 8796510.
HK068509.1:145-164
AGGAAAAAAAAAATACTATGACAAACTATC145CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Sequence 978 from patent US 8809630.
HK100469.1:145-164
AGGAAAAAAAAAATACTATGACAAACTATC145CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Sequence 477 from patent US 9476039.
KH309616.1:145-164
AGGAAAAAAAAAATACTATGACAAACTATC145CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Sequence 477 from patent US 9725728.
MI006260.1:145-164
AGGAAAAAAAAAATACTATGACAAACTATC145CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Sequence 6535 from patent US 10597667.
MO969913.1:101-120
AAGGAAAAAAAAATACTATGACAAACTATC101CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Sequence 477 from patent US 11566256.
OS286388.1:145-164
AGGAAAAAAAAAATACTATGACAAACTATC145CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Glycine max cDNA clone: GMFL01-23-C22, 3'end.
BW664422.1:113-132
AAGGAAAAAAAAATACTATGACAAACTATC113CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Glycine max cDNA clone: GMFL01-52-C21, 3'end.
BW684342.1:91-110
AAGGAAAAAAAAATACTATGACAAACTATC91CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
GM89023A1C10.r1 Gm-r1089 Glycine max cDNA clone Gm-r1089-8563 3, mRNA sequence.
CO985012.1:49-68
AAGGAAAAAAAAATACTATGACAAACTATC49CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
gmrtDrNS01_11-A_M13R_C11_091.s2 Water stressed 5h segment 2 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.
CX547699.1:101-120
AAGGAAAAAAAAATACTATGACAAACTATC101CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
gmrtDrNS01_07-B_M13R_E03_023.s2 Water stressed 5h segment 2 gmrtDrNS01 Glycine max cDNA 3', mRNA sequence.
CX702609.1:101-120
AAGGAAAAAAAAATACTATGACAAACTATC101CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Glycine max cultivar Williams 82 chromosome 3.
CP126428.1:34779594-34779613
AAGGAAAAAAAAATACTATGACAAACTATC34779594CTCACACTTCTGCAATGCCATAAGAATGGCAAGATAGTAGTAATACATTT
Bombus campestris genome assembly, chromosome: 3.
HG995128.1:10003089-10003108
CTCGACAAACTATAAATACTCTACTACTAA10003089CTCACACTTCTGCAATGCCACTTACTCAAGTGAGAAAACTGCTAGTTCTC
Hemaris fuciformis genome assembly, chromosome: 14.
OU015445.1:13465645-13465664
CTTGCAAATGCGGCCATCGCCCCTTAGCTT13465645CTCACACTTCTGCAATGCCATTTTAAATCATCTATCCAGGATATTCCCAG
Alcis repandata genome assembly, chromosome: 9.
OX421230.1:11753453-11753472
TTTTCAATGTATTCTCCGTTCTCCCTTTGA11753453CTCACACTTCTGCAATGCCAAGAAACGACATAATCTCCTCTGTCGTGTCC
Glycine max cDNA, clone: GMFL02-43-K03, 3'end.
DB987645.1:447-466
AAATGTATTACTACTATCTTGCCATTCTTA447TGGCATTGCAGAAGTGTGAGGATAGTTTGTCATAGTATTTTTTTTTCCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCACACTTCTGCAATGCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCACACTTCTGCAATGCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.912 | 0.903 | search_plus_done; http://172.18.8.135:50400/match?q=CTCACACTTCTGCAATGCCA&k=0&no_gap=0&offset=0&limit=50
1.113 | 0.202 | search_minus_done; http://172.18.8.135:50400/match?q=TGGCATTGCAGAAGTGTGAG&k=0&no_gap=0&offset=0&limit=27
1.114 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).