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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 07:13:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BOGYG25TR BOGY Brassica oleracea genomic clone BOGYG25, genomic survey sequence.
BH476508.1:606-625
TTAGTGACCTACACAGACATAGCCGGCGTC606CTCACATGGGCAACTTTATTAAGGTCTCACATGGACACTGGTCTCTTTGT
BOGTY84TR BOGT Brassica oleracea genomic clone BOGTY84, genomic survey sequence.
BH484962.1:523-542
TTAGTGACCTACACAGACATAGCCGGCGTC523CTCACATGGGCAACTTTATTAAAGGTCTCACATGGACACTGTCTCCTTTG
odi68d06.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH954002.1:244-263
TTAGTGACCTACACAGACATAGCCGGCGTC244CTCACATGGGCAACTTTATTAAAGGTCTCACATGGACACTGTCTCCTTTG
BOOAU19TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BOOAU19, genomic survey sequence.
BZ457334.1:654-673
TTAGTGACCTACACAGACATAGCCGGCGTC654CTCACATGGGCAACTTTATTAAAGGTCTCACATGGACACTGTCTCCTTTG
BOOAU19TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BOOAU19, genomic survey sequence.
BZ457343.1:708-727
TAGTGACCTACACAGAACATAGCCGGCGTC708CTCACATGGGCAACTTTATTAAAGGTCTCACATGGACACTGTCTCCTTTG
BOIGM43TF BO_1.4_1.6_KB_nuc Brassica oleracea genomic clone BOIGM43, genomic survey sequence.
CC949283.1:216-235
TTAGTGACCTACACAGACATAGCCGGCGTC216CTCACATGGGCAACTTTATTAAAGGTCTCACATGGACACTGTCTCCTTTG
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002P01, complete sequence.
AC232438.1:81566-81585
TTAGTGACCTATACAGACATAGCCGGCGTC81566CTCACATGGGCAACTTTATTAAAGGTCTCACATGGACACTGTCTCCTTTG
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:14196364-14196383
TTAGTGACCTACACAGACATAGCCGGCGTC14196364CTCACATGGGCAACTTTATTAAAGGTCTCACATGGACACTGTCTCCTTTG
Brassica napus genome assembly, chromosome: A03.
HG994357.1:14072205-14072224
TTAGTGACCTACACAGACATAGCCGGCGTC14072205CTCACATGGGCAACTTTATTAAAGGTCTCACATGGACACTGTCTCCTTTG
Brassica napus genome assembly, chromosome: C03.
HG994367.1:21871910-21871929
TTAGTGACCTACACAGACATAGCCGGCGTC21871910CTCACATGGGCAACTTTATTAAAAGTCTCACATGGACACTGTCTCCTTTG
Brassica rapa genome, scaffold: A03.
LR031572.1:13844721-13844740
TTAGTGACCTACACAGACATAGCCGGCGTC13844721CTCACATGGGCAACTTTATTAAAGGTCTCACATGGACACTGTCTCCTTTG
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:21660070-21660089
TTAGTGACCTACACAGACATAGCCGGCGTC21660070CTCACATGGGCAACTTTATTAAAGGTCTCACATGGACACTGTCTCCTTTG
Raphanus sativus genome assembly, chromosome: 6.
LR778315.1:33770442-33770461
GACCTACACAGACTCTGCATAGCCGGCGTC33770442CTCACATGGGCAACTTTATTAAAAGTCTCACATGGACACTGTCTCCTGTC
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:13970590-13970609
TTAGTGACCTACACAGACATAGCCGGCGTC13970590CTCACATGGGCAACTTTATTAAAGGTCTCACATGGACACTGTCTCCTTTG
Bellardia pandia genome assembly, chromosome: 1.
OU696529.1:113863224-113863243
GTGTGGATTAAATTTGGAGAATCCATGCTT113863224CTCACATGGGCAACTTTATTTGGCCTGTTCACGCGTCGGAAAACCTTCTG
Meliscaeva auricollis genome assembly, chromosome: 4.
OX403619.1:2917049-2917068
TTCCACGCTATTCCACGCTGTTCGATAATT2917049CTCACATGGGCAACTTTATTTGCAGTTCTTAAGCGTCAGAAAATCTTCAA
Ovis canadensis canadensis isolate 43U chromosome 8 sequence.
CP011893.1:23076951-23076970
TACAATTCTATAATTTGCCCTTGAGTAAGA23076951AATAAAGTTGCCCATGTGAGAAATAGCTCAAATGTAAACAAATACCTAAA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:57327719-57327738
CAAAGGAGACAGTGTCCATGTGAGACTTTT57327719AATAAAGTTGCCCATGTGAGGACGCCGGCTATGTCTGTGTAGGTCACTAA
Raphanus sativus genome assembly, chromosome: 3.
OY743209.1:1751840-1751859
GACAGGAGACAGTGTCCATGTGAGACTTTT1751840AATAAAGTTGCCCATGTGAGGACGCCGGCTATGCAGAGTCTGTGTAGGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCACATGGGCAACTTTATT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCACATGGGCAACTTTATT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.263 | 0.254 | search_plus_done; http://172.18.8.135:50400/match?q=CTCACATGGGCAACTTTATT&k=0&no_gap=0&offset=0&limit=50
0.369 | 0.106 | search_minus_done; http://172.18.8.135:50400/match?q=AATAAAGTTGCCCATGTGAG&k=0&no_gap=0&offset=0&limit=34
0.371 | 0.002 | cgi_end;

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