GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 23:12:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Arachis hypogaea cultivar Shitouqi chromosome B02.
CP030994.1:38500438-38500457
AAGGTCTGTGGCTGGCGTGATGCTCCCTCT38500438CTCACCTGCGAGCTCTCTCTTCCCTCTTCACAAATGGCGGCGGCAATGGC
Arachis ipaensis cultivar K30076 chromosome 02.
CP049893.1:38689130-38689149
AAGGTCTGTGGCTGGCGTGATGCTCCCTCT38689130CTCACCTGCGAGCTCTCTCTTCCCTCTTCACAAATGGCGGCGGCAATGGC
Triticum aestivum genome assembly, chromosome: 7A.
LR862547.1:326933827-326933846
TGCTCTCTCTCTCGTTCTCTCTGTCTCCCT326933827CTCACCTGCGAGCTCTCTCTCTCTCTCAGTGGAACCTCGCAGGAGCCCCA
Triticum aestivum genome assembly, chromosome: 7A.
LR865476.1:326773410-326773429
TGCTCTCTCTCTCGTTCTCTCTGTCTCCCT326773410CTCACCTGCGAGCTCTCTCTCTCTCTCAGTGGAACCTTGCAGGAGCCCCA
Aegilops sharonensis genome assembly, chromosome: 3S.
LR880968.1:350601192-350601211
CTCTCTCTCTCGTTATCTCGCTCTCTCCCT350601192CTCACCTGCGAGCTCTCTCTCTCTGGACCTGACTTGGAGTCTAAGAGGTG
Aegilops sharonensis genome assembly, chromosome: 3S.
LR880968.1:350604312-350604331
CTCTCTCTCTCGTTATCTCGCTCTCTCCCT350604312CTCACCTGCGAGCTCTCTCTCCGGAACCTGGCAGGAGCCCCATGACCGCC
Triticum turgidum subsp. durum genome assembly, chromosome: 7A.
LT934123.1:325888987-325889006
TGCTCTCTCTCTCGTTCTCTCTGTCTCCCT325888987CTCACCTGCGAGCTCTCTCTCTCTCTCAGTGGAACCTTGCAGGAGCCCCA
Triticum timopheevii genome assembly, chromosome: 7At.
OY997273.1:331102328-331102347
CTCTCTCTCTCTCGTTCTCTCTGTCTCCCT331102328CTCACCTGCGAGCTCTCTCTCTCTCTCTCTCTTAGTGGAACCTTGCAGGA
Arachis hypogaea DNA, clone: AHGS43N17.
DH961625.1:445-464
GCCATTGCCGCCGCCATTTGTGAAGAGGGA445AGAGAGAGCTCGCAGGTGAGAGAGGGAGCATCACGCCAGCCACAGACCTT
Arachis hypogaea cultivar Shitouqi chromosome B03.
CP030995.1:116472420-116472439
TGAAATGCGAGGAGAGAGAGAGAGAGAGAG116472420AGAGAGAGCTCGCAGGTGAGAGGGAGGCATCGCGTACAGCCACTATTGCC
Arachis hypogaea cultivar Shitouqi chromosome B06.
CP030998.1:19138161-19138180
AGAGAGAGACAAAACGCAACGAGGGGAGAG19138161AGAGAGAGCTCGCAGGTGAGAGAGGGAAGGGTCGCGCTCCACCACCATCG
Arachis ipaensis cultivar K30076 chromosome 03.
CP049894.1:114064491-114064510
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAG114064491AGAGAGAGCTCGCAGGTGAGAGGGAGGCATCGCGTACAGCCACTATTGCC
Arachis ipaensis cultivar K30076 chromosome 06.
CP049897.1:15773512-15773531
AGAGAGAGACAAAACGCAACGAGGGGAGAG15773512AGAGAGAGCTCGCAGGTGAGAGAGGGAAGGGTCGCGCTCCACCACCATCG
Arachis ipaensis cultivar K30076 chromosome 06.
CP049897.1:127729041-127729060
AGCGTCACCGCCGCTGTTCGCGAAGAGGGA127729041AGAGAGAGCTCGCAGGTGAGAGAGGAAGCGTCGCGCCAGCCACTGACCTC
Triticum aestivum genome assembly, chromosome: 7A.
LR862526.1:328217327-328217346
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG328217327AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
LR862568.1:339178044-339178063
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG339178044AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
LR865497.1:328968408-328968427
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG328968408AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
LR865518.1:328650094-328650113
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG328650094AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
LR865757.1:328257074-328257093
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG328257074AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
LR865778.1:325554274-325554293
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG325554274AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
LR877327.1:326448160-326448179
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG326448160AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
LR878453.1:324132382-324132401
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG324132382AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Aegilops longissima genome assembly, chromosome: 3S.
LR881071.1:297576074-297576093
GGCGGTCATGGGGCTCCTGCCAGGTTCCAG297576074AGAGAGAGCTCGCAGGTGAGAGGGAGAGAGCGAGATAACGAGAGAGAGAG
Aegilops longissima genome assembly, chromosome: 3S.
LR881071.1:297579194-297579213
CACCTCTTAGACTCCAAGTCAGGTCCAGAG297579194AGAGAGAGCTCGCAGGTGAGAGGGAGAGAGCGAGATAACGAGAGAGAGAG
Triticum aestivum genome assembly, chromosome: 7A.
LS992098.1:326552777-326552796
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG326552777AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
OU015739.1:337041516-337041535
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG337041516AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
OU343175.1:335010151-335010170
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG335010151AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
OU963890.1:329165474-329165493
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG329165474AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
OV100755.1:330060711-330060730
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG330060711AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
OW530328.1:330060711-330060730
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG330060711AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum aestivum genome assembly, chromosome: 7A.
OX637243.1:263083158-263083177
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG263083158AGAGAGAGCTCGCAGGTGAGAGGGAGACAGAGAGAACGAGAGAGAGAGCA
Triticum monococcum genome assembly, chromosome: 7A.
OY737856.1:344459848-344459867
GGGCTCCTGCGAGGTTCCACTGAGAGAGAG344459848AGAGAGAGCTCGCAGGTGAGAGGGAGAGAGAGAACGAGAGAGAGAGCTGA
Triticum monococcum genome assembly, chromosome: 7A.
OY737856.1:347209506-347209525
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG347209506AGAGAGAGCTCGCAGGTGAGAGGGAGAGAGAGAGAACGAGAGAGAGAGCA
Triticum monococcum genome assembly, chromosome: 7A.
OY737864.1:340790839-340790858
TGGGGCTCCTGCGAGGTTCCACTGAGAGAG340790839AGAGAGAGCTCGCAGGTGAGAGGGAGAGAGAGAATGAGAGAGAGAGCTGA
Triticum monococcum genome assembly, chromosome: 7A.
OY737864.1:343556918-343556937
GCTCCTGCGAGGTTCCACTGAGAGAGAGAG343556918AGAGAGAGCTCGCAGGTGAGAGGGAGAGAGAGAGAACGAGAGAGAGAGCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCACCTGCGAGCTCTCTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCACCTGCGAGCTCTCTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=CTCACCTGCGAGCTCTCTCT&k=0&no_gap=0&offset=0&limit=50
0.137 | 0.041 | search_minus_done; http://172.18.8.135:50400/match?q=AGAGAGAGCTCGCAGGTGAG&k=0&no_gap=0&offset=0&limit=42
0.154 | 0.018 | cgi_end;

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