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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 02:52:20, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOMMN13TR BO_2_3_KB Brassica oleracea genomic clone BOMMN13, genomic survey sequence.
BH727531.1:356-375
TATTCCAAAAAGTCATCGGGGGGCTCTCAT356CTCCAAAAAGAGCGCTTCACTTTCGAGGACATGCTTTGCTTCCAGAAGGT
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:38828214-38828233
AAAAAGTCATCGGGGGGCTCTCAGTCTCAT38828214CTCCAAAAAGAGCGCTTCACTTTCGAGGACATGCTTTGCTTCCAGAAGGT
Brassica napus cultivar Xiang5A chromosome 2.
CP151897.1:37582699-37582718
AAAAAGTCATCGGGGGGCTCTCAGTCTCAT37582699CTCCAAAAAGAGCGCTTCACTTTCGAGGACATGCTTTGCTTCCAGAAGGT
Brassica napus cultivar Xiang5A chromosome 12.
CP151907.1:66396269-66396288
TCCAAAAAGTCGTCATCGGGGGGCTCTCAT66396269CTCCAAAAAGAGCGCTTCACTTTCGAGGACATGCTTTGCTTCCAGAAGGT
Brassica napus cultivar Xiang5A chromosome 19.
CP151914.1:6831563-6831582
AAAAAGTCGTCGTCGTCATCGGGCTCTCAT6831563CTCCAAAAAGAGCGCTTCACTTTCGAGGACATGCTTTGCTTCCAGAAGGT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:7403774-7403793
AAAAAGTCGTCGTCGTCATCGGGCTCTCAT7403774CTCCAAAAAGAGCGCTTCACTTTCGAGGACATGCTTTGCTTCCAGAAGGT
Brassica rapa genome, scaffold: A02.
LR031573.1:31533870-31533889
AAAAAGTCATCGGGGGGCTCTCAATCTCAT31533870CTCCAAAAAGAGCGCTTCACTTTCGAGGACATGCTTTGCTTCCAGAAGGT
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:63767820-63767839
TCCAAAAAGTCGTCATCGGGGGGCTCTCAT63767820CTCCAAAAAGAGCGCTTCACTTTCGAGGACATGCTTTGCTTCCAGAAGGT
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:7442942-7442961
AAAAAGTCGTCGTCGTCATCGGGCTCTCAT7442942CTCCAAAAAGAGCGCTTCACTTTCGAGGACATGCTTTGCTTCCAGAAGGT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:32478891-32478910
AAAAAGTCATCGGGGGGCTCTCAATCTCAT32478891CTCCAAAAAGAGCGCTTCACTTTCGAGGACATGCTTTGCTTCCAGAAGGT
Zeus faber genome assembly, chromosome: 9.
OY482853.1:28150881-28150900
AGCCCGCATCCCGGCCAAACAAAAAGACTC28150881CTCCAAAAAGAGCGCTTCACCTTCTCAAACCAAAAGTTGTGTTTTTGTCT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_9344.
FX705266.1:837-856
TCCTTCTGGAAGCAAAGCATGTCCTCGAAA837GTGAAGCGCTCTTTTTGGAGATGAGACTGAGAGCCCCCCGATGACTTTTT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_49810.
FX738724.1:985-1004
TCCTTCTGGAAGCAAAGCATGTCCTCGAAA985GTGAAGCGCTCTTTTTGGAGATGAGATTGAGAGCCCCCCGATGACTTTTT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:17516-17535
ACCTTCTGGAAGCAAAGCATGTCCTCGAAA17516GTGAAGCGCTCTTTTTGGAGATGAGAGCCCCCCGATGACGACTTTTTGGA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:61719645-61719664
ACCTTCTGGAAGCAAAGCATGTCCTCGAAA61719645GTGAAGCGCTCTTTTTGGAGATGAGAGCCCGATGACGACGACGACTTTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCCAAAAAGAGCGCTTCAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCCAAAAAGAGCGCTTCAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.180 | 0.171 | search_plus_done; http://172.18.8.135:50800/match?q=CTCCAAAAAGAGCGCTTCAC&k=0&no_gap=0&offset=0&limit=50
0.257 | 0.077 | search_minus_done; http://172.18.8.135:50800/match?q=GTGAAGCGCTCTTTTTGGAG&k=0&no_gap=0&offset=0&limit=39
0.260 | 0.003 | cgi_end;

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