GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 15:06:53, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH064_02306m, 5' end sequence.
AB450735.1:111-131
CACAAGAAACCCACTTCCCTCTGCAAAATC111CTCCAAAACCATGTCCAGACCAAAACCCACCTCCAGATTCATCCTCTTCAC
Pyrus pyrifolia mRNA, clone: NFR1_03_06, 5' end sequence, expressed in fruit.
HX745882.1:111-131
CACAAGAAACCCACTTCCCTCTGCAAAATC111CTCCAAAACCATGTCCAGACCAAAACCCACCTCCAGATTCATCCTCTTCAC
Pyrus pyrifolia mRNA, clone: NFR1_03_18, 5' end sequence, expressed in fruit.
HX745892.1:111-131
CACAAGAAACCCACTTCCCTCTGCAAAATC111CTCCAAAACCATGTCCAGACCAAAACCCACCTCCAGATTCATCCTCTTCAC
Pyrus pyrifolia mRNA, clone: NFR1_03_22, 5' end sequence, expressed in fruit.
HX745895.1:111-131
CACAAGAAACCCACTTCCCTCTGCAAAATC111CTCCAAAACCATGTCCAGACCAAAACCCACCTCCAGATTCATCCTCTTCAC
Pyrus pyrifolia mRNA, clone: NFR1_03_41, 5' end sequence, expressed in fruit.
HX745914.1:111-131
CACAAGAAACCCACTTCCCTCTGCAAAATC111CTCCAAAACCATGTCCAGACCAAAACCCACCTCCAGATTCATCCTCTTCAC
Pyrus pyrifolia mRNA, clone: NFR1_03_55, 5' end sequence, expressed in fruit.
HX745927.1:111-131
CACAAGAAACCCACTTCCCTCTGCAAAATC111CTCCAAAACCATGTCCAGACCAAAACCCACCTCCAGATTCATCCTCTTCAC
Pyrus pyrifolia mRNA, clone: NFR1_03_62, 5' end sequence, expressed in fruit.
HX745934.1:111-131
CACAAGAAACCCACTTCCCTCTGCAAAATC111CTCCAAAACCATGTCCAGACCAAAACCCACCTCCAGATTCATCCTCTTCAC
TSA: Pyrus x bretschneideri Unigene89470_XinShao mRNA sequence.
JR673065.1:164-184
CACAAGAAACCCACTTCCCTCTGCAAAATC164CTCCAAAACCATGTCCAGACCAAAACCCACCTCCAGATTCATCCTCTTCAC
Torulaspora globosa strain CBS764 chromosome 3.
CP059248.1:1175180-1175200
CTGGAGGACGTAATTTAGTAGGTCAGAAGA1175180GGTCTGGACATGGTTTTGGAGGCTACGATTATTGTTATTGACAACTCTGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCCAAAACCATGTCCAGACC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCCAAAACCATGTCCAGACC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.597 | 0.588 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCAAAACCATGTCCAGACC&k=0&no_gap=0&offset=0&limit=50
0.629 | 0.033 | search_minus_done; http://172.18.8.135:50400/match?q=GGTCTGGACATGGTTTTGGAG&k=0&no_gap=0&offset=0&limit=42
0.630 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).