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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:06:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Apodemus sylvaticus genome assembly, chromosome: 1.
OX359297.1:135785967-135785985
GGGGCTTTATGTGCCTCAGCCCTAATCCTT135785967CTCCAAACCCAACAACACAAATGTTTTGCATAAGGGGAAACTGAGGCCT
Heterocephalus glaber genome assembly, chromosome: 10.
OZ001075.1:43872116-43872134
AGCTTTTGGAGGTAGAGATTTCCTGTGACT43872116CTCCAAACCCAACAACACACCTTATTCATCAGTCTTTTTGGCAAGCAGA
Heterocephalus glaber genome assembly, chromosome: 10.
OZ001118.1:44358852-44358870
AGCTTTTGGAGGTAGAGATTTCCTGTGACT44358852CTCCAAACCCAACAACACACCTTATTCATCAGTCTTTTTGGCAAGCAGA
Micromys minutus genome assembly, chromosome: 31.
OZ004811.1:22504131-22504149
CAAAAGTGAACTCTAGATTACATCAACGAT22504131CTCCAAACCCAACAACACACACACACACACACACACACACACACACACA
Chanos chanos genome assembly, chromosome: 1.
LR697106.1:50467603-50467621
TCCCCCATCTCCCCGTATCCATTACAAAGC50467603CTCCAAACCCAACAACACACATCAATACAACCATTAATATTGTCACAAG
Raja brachyura genome assembly, chromosome: 7.
OY740787.1:88713552-88713570
CATTATTATCACTGAATCTAAATCCTGAAA88713552CTCCAAACCCAACAACACAGTGCGAGAGTGGTAGATTTCTGTAGTCATG
TSA: Cannabis sativa PK15372.1_1.CasaPuKu mRNA sequence.
JP449235.1:9-27
TGTTTCAC9CTCCAAACCCAACAACACAACTCTTCTTCTTCTTCTTCTTCCTAAAATA
Symbiodinium minutum DNA, clone: SYB2F-188D08, forward.
GA591479.1:192-210
CGTACATGACATATTTTCCCTATCGATTTC192CTCCAAACCCAACAACACATTCACATGTCGTCCCTCATTTTCTTGAATC
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC M024A17, *** SEQUENCING IN PROGRESS ***, 13 unordered pieces.
AC275135.1:58070-58088
TTCTTAACATTCTCAATAAACGATGAATCC58070CTCCAAACCCAACAACACAAGCATTGACATTGAACCCTCAAACAGAAGA
Spinacia oleracea subsp. turkestanica cultivar PI494751 chromosome X.
CP130739.1:90897649-90897667
AATTTGATCCCACCAAGCTGATTACACCCT90897649CTCCAAACCCAACAACACAACTTGACCGTGGCTGGCGCAAGACCTTCAA
Lathyrus sativus genome assembly, chromosome: 1.
OZ012735.1:737778960-737778978
ACCCATAAATTAACTTGCTAATCACAAACA737778960CTCCAAACCCAACAACACATTCAACATCAATCCACCATTAACAAAAACC
Methylobacter sp. YRD-M1 chromosome, complete genome.
CP091424.1:2907719-2907737
AGGGCAAATGTTTTTAGCGGCACGAATAAG2907719CTCCAAACCCAACAACACATAATGATGAAAATGAATCACATCAGGCTGG
Sphaerophoria taeniata genome assembly, chromosome: 3.
OX016542.1:35846448-35846466
GTCGTGTCGCGGTAGTCTGGTTGACTCGGG35846448CTCCAAACCCAACAACACAACAGAAAACCAAATGAAACAAATCCTTGCA
Piscicola geometra genome assembly, chromosome: 2.
OX030956.1:47210-47228
ACACAAAATCACGAAACAATCCCTCCATCT47210CTCCAAACCCAACAACACACCCTTACACCTATACTTTTAGCCCTCCAAA
Piscicola geometra genome assembly, chromosome: 2.
OX030956.1:52056-52074
ACACAAAATCACGAAACAATCCCTCCATCT52056CTCCAAACCCAACAACACACCCTTACACCTATACTTTTAGCCCTCCAAA
Piscicola geometra genome assembly, chromosome: 6.
OX030960.1:2529316-2529334
AAAAAAAATCACCAAACAAACCCTCCATCT2529316CTCCAAACCCAACAACACACCCCTACACCTATACTTTCAGTTCCCCAAA
Abrostola triplasia genome assembly, chromosome: 3.
OX276423.1:2917120-2917138
CACCTCCTTGTCAAATTTAACCCCCTTCCA2917120CTCCAAACCCAACAACACACACCTCTACAAGCCATAAAAAAAACACCAC
Acleris cristana genome assembly, chromosome: Z.
OX411772.1:45861367-45861385
TGGACAGTATTATTTGACGTTAAAAGTAAG45861367CTCCAAACCCAACAACACATCGAAGCTGGAAATATCAATATTTATAAAA
Lumbricus terrestris genome assembly, chromosome: 2.
OX457037.1:44674417-44674435
TGTCCTGATGTATGAGACCAGCAATTGATT44674417CTCCAAACCCAACAACACACAATGAACAAGCGACTGCCTAAGAAAACAA
Drosophila subobscura genome assembly, chromosome: E.
OY757195.1:19833691-19833709
CTAAAGATTTTCAAAGTAAACAGCACACGA19833691CTCCAAACCCAACAACACATACATACACCCAGCCCACGTATAAAATTAC
Drosophila subobscura genome assembly, chromosome: E.
OY757497.1:20137234-20137252
CTAAAGATTTTCAAAGTAAACAGCACACGA20137234CTCCAAACCCAACAACACATACATACACCCAGCCCACGTATAAAATTAC
Lordithon lunulatus genome assembly, chromosome: 2.
OZ012667.1:48202933-48202951
CGATCGAGGAACATAAGCCTTGAAAACACC48202933CTCCAAACCCAACAACACAAAGAGGGCCCAAAAAGCAAATAATCAACAA
Heterocephalus glaber genome assembly, chromosome: 16.
OX090924.1:49873828-49873846
TCTGCTTGCCAAAAAGACTGATGAATAAGG49873828TGTGTTGTTGGGTTTGGAGAGTCACAGGAAATCTCTACCTCCAAAAGCT
Heterocephalus glaber genome assembly, chromosome: 16.
OX090956.1:33573742-33573760
TCTGCTTGCCAAAAAGACTGATGAATAAGG33573742TGTGTTGTTGGGTTTGGAGAGTCACAGGAAATCTCTACCTCCAAAAGCT
Chionomys nivalis genome assembly, chromosome: 3.
OX465451.1:105823278-105823296
CCCACGCCCACATTTATACATAGGGATCTC105823278TGTGTTGTTGGGTTTGGAGGACCTGATGGGGTCCGAAAACCAGATAGCA
Myotis daubentonii genome assembly, chromosome: 11.
OY725370.1:54722700-54722718
GTCCAGCAATTGGCCTCATCTGTTAGAAAG54722700TGTGTTGTTGGGTTTGGAGCTCCCGTGTGTGGGTGCTGCCCCGGTTAAT
Salmo trutta genome assembly, chromosome: 5.
LR584433.1:61641984-61642002
TAGAAAACGTGCTACATTGATACTGATTAC61641984TGTGTTGTTGGGTTTGGAGCTGGAAAGAAAGGCATTTCACTGTACTAGT
Pelobates cultripes genome assembly, chromosome: 02.
OW240913.1:169834595-169834613
ACTGCATTCCTGGCGCCATAATCACTACAG169834595TGTGTTGTTGGGTTTGGAGTATTCCTGCGATTAACTATTTCACAAACCT
JP 2009538603-A/289: Modified Microbial Nucleic Acid.
FV536310.1:2722587-2722605
TATGTTTAGTTGGTGTTGTTTGTGGTTGAT2722587TGTGTTGTTGGGTTTGGAGGGTTGGAAGTAGTGTTTGTTGGAGAAGGTG
JP 2009538603-A/290: Modified Microbial Nucleic Acid.
FV536311.1:2722587-2722605
TATGTTTAGTTGGTGTTGTTTGTGGTTGAT2722587TGTGTTGTTGGGTTTGGAGGGTTGGAAGTAGTGTTTGTTGGAGAAGGTG
Rattus norvegicus clone CH230-120H21, WORKING DRAFT SEQUENCE, 4 unordered pieces.
AC098104.6:218023-218041
TGCTTTGTGATCATAGCAAGATCATGTGTG218023TGTGTTGTTGGGTTTGGAGGTCATTGGCACAATCCAGAGATCACTTTGG
Rattus norvegicus clone CH230-127G19, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC132033.4:107665-107683
TGCTTTGTGATCATAGCAAGATCATGTGTG107665TGTGTTGTTGGGTTTGGAGGTCATTGGCACAATCCAGAGATCACTTTGG
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC M054O11, *** SEQUENCING IN PROGRESS ***, 11 unordered pieces.
AC271197.1:113878-113896
TCTTCTGTTTGAGGGTTCAATGTCAATGCT113878TGTGTTGTTGGGTTTGGAGGGATTCATCGTTTATTGAGAATGTTAAGAA
Vigna unguiculata cultivar Xiabao 2 chromosome Vu08.
CP039351.1:22445331-22445349
TCTTCTGTTTGAGGGTTCAATGTCAATGCT22445331TGTGTTGTTGGGTTTGGAGGGATTCATCGTTTATTGAGAATGTTAAGAA
Bipolaris zeicola strain LWII chromosome 14.
CP111180.1:1184513-1184531
TATGATGAATGCCAAACTGCTCTTATCATC1184513TGTGTTGTTGGGTTTGGAGGGACAAAGGTCGCTCTGTCAGTCTACCATA
Euphrasia confusa genome assembly, chromosome: 19.
OX940967.1:21551615-21551633
GCTAATTTTTTCTGAATTTGTTGAAATCGT21551615TGTGTTGTTGGGTTTGGAGAGAGAGAAAAAAGGTTTGAGAGAGAGAGAA
Triglochin maritima genome assembly, chromosome: 4.
OY821773.1:4131695-4131713
AGGAGTCGACGGAGTCCGGCGGAAGCCATG4131695TGTGTTGTTGGGTTTGGAGAGTTTACTTTAGGGGACGAACATCAAATGG
Autographa pulchrina genome assembly, chromosome: 13.
FR997775.1:7092791-7092809
CTTCTGCATAAATGCTGTTAGTTAGAATAT7092791TGTGTTGTTGGGTTTGGAGTACCAAATTCAATAGTATTTTTATCGGCAG
Micropterix aruncella genome assembly, chromosome: 20.
OX155969.1:14834114-14834132
ATTTTGCCTTTAGAGTCGTCCCACACAAAC14834114TGTGTTGTTGGGTTTGGAGCGTACTGTCTGACCCATTTTGGCACAAGCC
Lumbricus rubellus genome assembly, chromosome: 4.
OX243814.1:22800444-22800462
TTGTTTTCTTAGGCAGTCGCTTGTTCATTG22800444TGTGTTGTTGGGTTTGGAGAATCAATTGCTGGTCTCATACATCAGGACA
Monopis laevigella genome assembly, chromosome: 24.
OX375863.1:6537559-6537577
ACGTTTTCTTTTCATTTGTCTTGTCTCCAT6537559TGTGTTGTTGGGTTTGGAGACCGTTCGTTAGGTATAGTTTATAATTTTT
Amphimallon solstitiale genome assembly, chromosome: 2.
OY720676.1:46603700-46603718
AAAAAAAATTGCTGCCAAATATTATTATTT46603700TGTGTTGTTGGGTTTGGAGTCACTATTGATCACAATCATGGAGGTAGAA
Thysanoteuthis rhombus genome assembly, chromosome: 17.
OY735214.1:10305550-10305568
ATGTTTTTTGTGTGTGTGTGTGTGTGTGTG10305550TGTGTTGTTGGGTTTGGAGTTCTTTCACTTACCTAAACCCCCCACCCAC
Aporrectodea icterica genome assembly, chromosome: 3.
OY744604.1:51664858-51664876
TTGTTTTCTTAGGCAGTCGCTTGTTCATTG51664858TGTGTTGTTGGGTTTGGAGAATCAATTGCTGCTCTCATACATCATGACA
Lordithon lunulatus genome assembly, chromosome: 5.
OZ012670.1:15101452-15101470
TTGTTGATTATTGGCTTTTTGGGCCCTCTT15101452TGTGTTGTTGGGTTTGGAGGCTGTTTTCAAGGCTTATGTTCCTCCATCA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCCAAACCCAACAACACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCCAAACCCAACAACACA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.379 | 0.370 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCAAACCCAACAACACA&k=0&no_gap=0&offset=0&limit=50
0.536 | 0.157 | search_minus_done; http://172.18.8.135:50400/match?q=TGTGTTGTTGGGTTTGGAG&k=0&no_gap=0&offset=0&limit=28
0.551 | 0.015 | cgi_end;

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