GGGenome | Results

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2025-04-08 13:26:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Sequence 1398 from patent US 10006042.
MI846125.1:200-223

AATTCAACCCCTCAACTCCTCATGCTCAAT200CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

Sequence 1398 from patent US 10337023.
MO169292.1:200-223

AATTCAACCCCTCAACTCCTCATGCTCAAT200CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

Sequence 1398 from patent US 10774340.
MV703039.1:200-223

AATTCAACCCCTCAACTCCTCATGCTCAAT200CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

Sequence 1398 from patent US 11499161.
OO870820.1:200-223

AATTCAACCCCTCAACTCCTCATGCTCAAT200CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CGN-29447 Leaf Coffea canephora cDNA clone cccl8n17 5', mRNA sequence.
DV687445.1:101-124

AATTCAACCCCTCAACTCCTCATGCTCAAT101CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CGN-30950 Leaf Coffea canephora cDNA clone cccl18l5 5', mRNA sequence.
DV688321.1:110-133

AATTCAACCCCTCAACTCCTCATGCTCAAT110CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CGN-31340 Leaf Coffea canephora cDNA clone cccl18c7 5', mRNA sequence.
DV688601.1:83-106

AATTCAACCCCTCAACTCCTCATGCTCAAT83CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CGN-31520 Leaf Coffea canephora cDNA clone cccl23o11 5', mRNA sequence.
DV688727.1:115-138

AATTCAACCCCTCAACTCCTCATGCTCAAT115CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CGN-31780 Leaf Coffea canephora cDNA clone cccl21n22 5', mRNA sequence.
DV688905.1:212-235

AATTCAACCCCTCAACTCCTCATGCTCAAT212CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCATTTTTTATT

CGN-32103 Leaf Coffea canephora cDNA clone cccl24b24 5', mRNA sequence.
DV689145.1:120-143

AATTCAACCCCTCAACTCCTCATGCTCAAT120CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAGCAGCAAGTCTTATT

CGN-32843 Leaf Coffea canephora cDNA clone cccl9k12 5', mRNA sequence.
DV689699.1:91-114

TATTCAGCCCCTCAACTCCTCATGCTCAAT91CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CGN-42130 Leaf Coffea canephora cDNA clone cccl28l14 5', mRNA sequence.
DV696851.1:83-106

CATTCAACCCCTCAACTCCTCATGCTCAAT83CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CGN-42308 Leaf Coffea canephora cDNA clone cccl28o17 5', mRNA sequence.
DV696999.1:67-90

AATTCAACCCCTCAACTCCTCATGCTCCCC67CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CC-L01_021_G12 Coffea young leaves Coffea canephora cDNA clone CC-L01_021_G12, mRNA sequence.
EE193327.1:97-120

AATTCAACCCCTCAACTCCTCATGCTCAAT97CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CC-L01_022_B04 Coffea young leaves Coffea canephora cDNA clone CC-L01_022_B04, mRNA sequence.
EE193350.1:81-104

AATTCAACCCCTCAACTCCTCATGCTCAAT81CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CC-L01_032_H03 Coffea young leaves Coffea canephora cDNA clone CC-L01_032_H03, mRNA sequence.
EE194133.1:96-119

AATTCAACCCCTCAACTCCTCATGCTCAAT96CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CC-L01_057_C10 Coffea young leaves Coffea canephora cDNA clone CC-L01_057_C10, mRNA sequence.
EE195301.1:211-234

AATTCAACCCCTCAACTCCTCATGCTCAAT211CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CA00-XX-LV4-046-A02-JM.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-046-A02-JM, mRNA sequence.
GT694263.1:54-77

ATTCAACCCCTCAACTCTTCATGCCTCAAT54CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CA00-XX-LV8-019-A05-EP.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-019-A05-EP, mRNA sequence.
GT700979.1:97-120

AATTCAACCCCTCAACTCTTCATGCTCAAT97CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CA00-XX-LV8-055-E09-AG.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-055-E09-AG, mRNA sequence.
GT700980.1:53-76

AATTCAACCCCTCAACTCTTCATGCTCAAT53CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CA00-XX-LV9-001-A10-EZ.F Coffea arabica LV9 Coffea arabica cDNA clone CA00-XX-LV9-001-A10-EZ, mRNA sequence.
GT712182.1:52-75

AATTCAACCCCTCAACTCTTCATGCTCAAT52CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CA00-XX-BP1-086-D11-BF.F Coffea arabica BP1 Coffea arabica cDNA clone CA00-XX-BP1-086-D11-BF, mRNA sequence.
GT722325.1:53-76

CATTCAACCCCTCAACTCTTCATGCTCAAT53CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CA00-XX-RX1-004-G10-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-004-G10-EB, mRNA sequence.
GT730748.1:53-76

AATTCAACCCCTCAACTCTTCATGCTCAAT53CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

CCES81 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110721.1:210-233

AATTCAACCCCTCAACTCCTCATGCTCAAT210CTCCACACCAACAAAATCCCACTTGGGATTTAGCCAAAAACAGCAAGTCTTATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

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Debug Info:

0.009 | 0.009 | search_start;
1.448 | 1.439 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCACACCAACAAAATCCCACTT&k=0&no_gap=0&offset=0&limit=50
1.480 | 0.032 | search_minus_done; http://172.18.8.135:50400/match?q=AAGTGGGATTTTGTTGGTGTGGAG&k=0&no_gap=0&offset=0&limit=26
1.480 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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