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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 22:55:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Onychomys torridus genome assembly, chromosome: X.
LR877211.1:15745059-15745077
AGGTACAGTCCAGTTGGGTTCTCTGGAGAA15745059CTCCACTCAGTCTACAACCCAGCATCCAGGTTCATCAGGAACCAAGATA
Onychomys arenicola genome assembly, chromosome: X.
OX460370.1:124026819-124026837
AGGTGCAGTCCAGTTGGGTTATCTGCAGAA124026819CTCCACTCAGTCTACAACCCAGCATCCAGGTTCATCAGGAACCAAGATA
Onychomys leucogaster genome assembly, chromosome: X.
OX460441.1:99752923-99752941
AGGTGCAGTCCAGTTGGGTTCTCTGGAGAA99752923CTCCACTCAGTCTACAACCCAGCATCCAGGTTCATCAGGAGCCAAGATA
Onychomys torridus genome assembly, chromosome: X.
OX460905.1:94726747-94726765
AGGTACAGTCCAGTTGGGTTCTCTGGAGAA94726747CTCCACTCAGTCTACAACCCAGCATCCAGGTTCATCAGGAACCAAGATA
Picea abies EST, clone K0000100014H04F1.
AM169693.1:121-139
AGATCCGCAGCCAAAGGAATCTGTCACGCC121CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea abies EST, clone K0000200009G10F1.
AM170785.1:91-109
AGATCCGCAGCCAAAGGAATCTGTCACGCC91CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea abies EST, clone K0000200009H09F1.
AM170795.1:69-87
AGATCCGCAGCCAAAGGAATCTGTCACGCC69CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
GQ0025.BR_B23 GQ002: Female cones developmental sequence Picea glauca cDNA clone GQ0025_B23 5', mRNA sequence.
CK440468.2:311-329
AGATCCGCAGCCAAAGGAATCTGTCACGCC311CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
GQ0025.BR_B02 GQ002: Female cones developmental sequence Picea glauca cDNA clone GQ0025_B02 5', mRNA sequence.
CK440872.2:171-189
AGATCCGCAGCCAAAGGAATCTGTCACGCC171CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0017.B21_P07 WS-ES-A-1 Picea glauca cDNA clone WS0017_P07 3', mRNA sequence.
CO229446.1:279-297
AGATCCGCAGCCGAAGGAATCTGTCACGCC279CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS00712.B21_D11 WS-PS-N-A-8 Picea glauca cDNA clone WS00712_D11 3', mRNA sequence.
CO239962.1:234-252
AGATCCGCAGCCAAAGGAATCTGTCACGCC234CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCTCCAGCC
GQ0258.B3_I07 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0258_I07 5', mRNA sequence.
CO489238.2:51-69
AGATCCGCAGCCAAAGGAATCTGTCACGCC51CTCCACTCAGTCTACAACCCGGATTCCTCCACCTCCTCCTCCTCCAGCC
GQ02512.B3_P05 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ02512_P05 5', mRNA sequence.
CO489245.2:272-290
AGATCCGCAGCCAAAGGAATCTGTCACGCC272CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCTCCAGCC
WS00949.BR_H06 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00949_H06 5, mRNA sequence.
DR449215.1:296-314
AGATCCGCAGCCAAAGGAATCTGTCACGCC296CTCCACTCAGTCTACAACCCGGATTCCTCCACCTCCTCCTCCTCCAGCC
WS00949.BR_I06 IS-B-N-A-10 Picea engelmannii x Picea glauca cDNA clone WS00949_I06 5, mRNA sequence.
DR449237.1:296-314
AGATCCGCAGCCAAAGGAATCTGTCACGCC296CTCCACTCAGTCTACAACCCGGATTCCTCCACCTCCTCCTCCTCCAGCC
WS02812.C21_I08 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS02812_I08 5, mRNA sequence.
DR483827.1:303-321
AGATCCGCAGCCAAAGGAATCTGTCACGCC303CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0288.B21_B13 SS-IB-A-FL-13 Picea sitchensis cDNA clone WS0288_B13 5, mRNA sequence.
DR487827.1:303-321
AGATCCGCAGCCAAAGGAATCTGTCACGCC303CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS02916.C21_K04 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02916_K04 5, mRNA sequence.
DR498764.1:110-128
AAATCCACAGCCAAAGGACTCTTCCACGCC110CTCCACTCAGTCTACAACCCCGCTTTCTCCTCCTCCTCCTCCGGCCCCT
WS0298.B21_P08 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS0298_P08 5, mRNA sequence.
DR503411.1:303-321
AGATCCGCAGCCAAAGGAATCTGTCACGCC303CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS02719.B21_F12 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02719_F12 5, mRNA sequence.
DR525199.1:298-316
AGATCCACAGCCAAAGGACTCTTTCACGCC298CTCCACTCAGTCTACAACCCCGCTTTCTCCTCCTCCTCCTCCGGCCCCT
WS02731.C21_G18 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02731_G18 5, mRNA sequence.
DR530051.1:302-320
AGATCCGCAGCCAAAGGAATCTGTCACGCC302CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS02732.C21_K06 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02732_K06 5, mRNA sequence.
DR530463.1:451-469
AGATCCGCAGCCAAAGGAATCTGTCACGCC451CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS02742.C21_G06 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02742_G06 5, mRNA sequence.
DR534117.1:178-196
AGATCCACAGCCAAAGGACTCTTCCACGCC178CTCCACTCAGTCTACAACCCCGCTTTCTCCTCCTCCTCCTCCGGCCCCT
WS02750.C21_C12 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02750_C12 5, mRNA sequence.
DR536785.1:220-238
GAGAGGTCAGCCAAAGGAATCTGTCACGCC220CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
GQ0258.B3_K21 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0258_K21 5', mRNA sequence.
DV991301.2:51-69
AGATCCGCAGCCAAAGGAATCTGTCACGCC51CTCCACTCAGTCTACAACCCGGATTCCTCCACCTCCTCCTCCTCCAGCC
GQ0259.B3_A13 GQ025: Annual flush SHOOTS diurnal cycle- trees Picea glauca cDNA clone GQ0259_A13 5', mRNA sequence.
DV992293.2:51-69
AGATCCGCAGCCAAAGGAATCTGTCACGCC51CTCCACTCAGTCTACAACCCGGATTCCTCCACCTCCTCCTCCTCCAGCC
WS0366.C21_K16 SS-B-N-21 Picea sitchensis cDNA clone WS0366_K16 3', mRNA sequence.
ES247760.1:291-309
AGATCCGCAGCCAAAGGAATCTGTCACGCC291CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS03710.C21_A02 SS-B-N-22 Picea sitchensis cDNA clone WS03710_A02 3', mRNA sequence.
ES250115.1:280-298
AGATCCGCAGCCAAAGGAATCTGTCACGCC280CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS03710.C21_G02 SS-B-N-22 Picea sitchensis cDNA clone WS03710_G02 3', mRNA sequence.
ES250241.1:280-298
AGATCCGCAGCCAAAGGAATCTGTCACGCC280CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS03714.C21.1_H04 SS-B-N-22 Picea sitchensis cDNA clone WS03714_H04 3', mRNA sequence.
ES251387.1:283-301
AGATCCGCAGCCAAAGGAATCTGTCACGCC283CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS03722.C21_L23 SS-B-N-22 Picea sitchensis cDNA clone WS03722_L23 3', mRNA sequence.
ES254284.1:284-302
AGATCCGCAGCCAAAGGAATCTGTCACGCC284CTCCACTCAGTCTACAACCCGGCCTCGTGC
WS03723.C21_N21 SS-B-N-22 Picea sitchensis cDNA clone WS03723_N21 3', mRNA sequence.
ES254656.1:190-208
AGATCCGCAGCCAAAGGAATCTGTCACGCC190CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS03727.C21_D08 SS-B-N-22 Picea sitchensis cDNA clone WS03727_D08 3', mRNA sequence.
ES255796.1:265-283
AGATCCGCAGCCAAAGGAATCTGTCACGCC265CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0382.C21_G17 SS-B-23 Picea sitchensis cDNA clone WS0382_G17 3', mRNA sequence.
ES259898.1:40-58
AGATCCGCAGCCAAAGGAATCTGTCACGCC40CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0384.C21_O01 SS-B-23 Picea sitchensis cDNA clone WS0384_O01 3', mRNA sequence.
ES260610.1:270-288
AGATCCGCAGCCAAAGGAATCTGTCACGCC270CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0401.C21_C12 SS-S-25 Picea sitchensis cDNA clone WS0401_C12 3', mRNA sequence.
ES262076.1:272-290
TATGGCAGAGCCAAAGGAATCTGTCACGCC272CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0402.C21_L05 SS-S-25 Picea sitchensis cDNA clone WS0402_L05 3', mRNA sequence.
ES262521.1:274-292
AGATCCGCAGCCAAAGGAATCTGTCACGCC274CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0402.C21_P15 SS-S-25 Picea sitchensis cDNA clone WS0402_P15 3', mRNA sequence.
ES262605.1:244-262
AGATCCGCAGCCAAAGGAATCTGTCACGCC244CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGACCCC
WS0403.C21_G14 SS-S-25 Picea sitchensis cDNA clone WS0403_G14 3', mRNA sequence.
ES262734.1:181-199
AGATCAGCAGCCAAAGGAACCTGTCACGCC181CTCCACTCAGTCTACAACCCGCATTCCTCCTCCTCCTCCTCCTGCCCCT
WS0403.C21_J07 SS-S-25 Picea sitchensis cDNA clone WS0403_J07 3', mRNA sequence.
ES262788.1:244-262
AGATCCGCAGCCAAAGGAATCTGTCACGCC244CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0403.C21_K10 SS-S-25 Picea sitchensis cDNA clone WS0403_K10 3', mRNA sequence.
ES262811.1:216-234
AGATCAGCAGCCAAAGGAACCTGTCACGCC216CTCCACTCAGTCTACAACCCGCATTCCTCCTCCTCCTCCTCCTGCCCCT
WS0404.C21_J04 SS-S-25 Picea sitchensis cDNA clone WS0404_J04 3', mRNA sequence.
ES263090.1:169-187
AGATCCGCAGCCAAAGGAATCTGTCACGCC169CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0404.C21_J22 SS-S-25 Picea sitchensis cDNA clone WS0404_J22 3', mRNA sequence.
ES263105.1:209-227
AGATCAGCAGCCAAAGGAACCTGTCACGCC209CTCCACTCAGTCTACAACCCGCATTCCTCCTCCTCCTCCTCCTGCCCCT
WS0411.C21_P14 SS-NE-A-26 Picea sitchensis cDNA clone WS0411_P14 3', mRNA sequence.
ES667267.1:151-169
AGATCCGCAGCCAAAGGAATCTGTCACGCC151CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0412.C21_D13 SS-NE-A-26 Picea sitchensis cDNA clone WS0412_D13 3', mRNA sequence.
ES667306.1:205-223
AGATCCGCAGCCAAAGGAATCTGTCACGCC205CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0412.C21_G10 SS-NE-A-26 Picea sitchensis cDNA clone WS0412_G10 3', mRNA sequence.
ES667345.1:146-164
AGATCCACAGCCAAAGGACTCTTTCACGCC146CTCCACTCAGTCTACAACCCCGCTTTCTCCTCCTCCTCCTCCGGCCCCT
WS0413.C21_I11 SS-NE-A-26 Picea sitchensis cDNA clone WS0413_I11 3', mRNA sequence.
ES667584.1:257-275
AGATCCGCAGCCAAAGGAATCTGTCACGCC257CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0414.C21_I21 SS-NE-A-26 Picea sitchensis cDNA clone WS0414_I21 3', mRNA sequence.
ES667763.1:265-283
AGATCCGCAGCCAAAGGAATCTGTCACGCC265CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0421.C21_H18 SS-NE-27 Picea sitchensis cDNA clone WS0421_H18 3', mRNA sequence.
ES667970.1:149-167
AGATCCGCAGCCAAAGGAACCTGTCATGCC149CTCCACTCAGTCTACAACCCGCATTCCTCCTCCTCCTCCTCCTCCTGCC
WS0424.C21_A04 SS-NE-27 Picea sitchensis cDNA clone WS0424_A04 3', mRNA sequence.
ES668656.1:272-290
AGATCCGCAGCCAAAGGAACCTGTCATGCC272CTCCACTCAGTCTACAACCCGCATTCCTCCTCCTCCTCCTCCTCCNTGC
WS0424.C21_I04 SS-NE-27 Picea sitchensis cDNA clone WS0424_I04 3', mRNA sequence.
ES668812.1:284-302
AGATCCGCAGCCAAAGGAATCTGTCACGCC284CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS0424.C21_M21 SS-NE-27 Picea sitchensis cDNA clone WS0424_M21 3', mRNA sequence.
ES668899.1:288-306
AGATCCGCAGCCAAAGGAACCTGTCATGCC288CTCCACTCAGTCTACAACCCGCATTCCTCCTCCTCCTCCTCCTCCCTGC
WS04213.C21_B04 SS-NE-27 Picea sitchensis cDNA clone WS04213_B04 3', mRNA sequence.
ES669969.1:281-299
AGATCCGCAGCCAAAGGAATCTGTCACGCC281CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
WS04213.C21_G24 SS-NE-27 Picea sitchensis cDNA clone WS04213_G24 3', mRNA sequence.
ES670086.1:275-293
AGATCCGCAGCCAAAGGAATCTGTCACGCC275CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
TSA: Abies alba contig20624.Aaseedling mRNA sequence.
JV155767.1:333-351
AGATCCACAGCCAAAGGAAGCTGTCACGCC333CTCCACTCAGTCTACAACCCCCATTTCTCCTCCTCCTCCTCCGCCTGCC
Picea sitchensis clone WS02731_G18 unknown mRNA.
BT070485.1:303-321
AGATCCGCAGCCAAAGGAATCTGTCACGCC303CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea sitchensis clone WS02732_K06 unknown mRNA.
BT070499.1:451-469
AGATCCGCAGCCAAAGGAATCTGTCACGCC451CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea sitchensis clone WS0288_B13 unknown mRNA.
BT071407.1:303-321
AGATCCGCAGCCAAAGGAATCTGTCACGCC303CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea glauca clone GQ03609_M07 mRNA sequence.
BT115124.1:311-329
AGATCCGCAGCCAAAGGAATCTGTCACGCC311CTCCACTCAGTCTACAACCCGGATTCCTCCACCTCCTCCTCCTCCAGCC
Picea sitchensis clone WS02812_I08 unknown mRNA.
EF083635.1:303-321
AGATCCGCAGCCAAAGGAATCTGTCACGCC303CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea sitchensis clone WS02719_F12 unknown mRNA.
EF084929.1:295-313
AGATCCACAGCCAAAGGACTCTTTCACGCC295CTCCACTCAGTCTACAACCCCGCTTTCTCCTCCTCCTCCTCCGGCCCCT
Picea sitchensis clone WS0298_P08 unknown mRNA.
EF085008.1:304-322
AGATCCGCAGCCAAAGGAATCTGTCACGCC304CTCCACTCAGTCTACAACCCGGATTCCTCCTCCTCCTCCTCCAGCCCCT
Picea sitchensis clone WS02742_G06 unknown mRNA.
EF676564.1:180-198
AGATCCACAGCCAAAGGACTCTTCCACGCC180CTCCACTCAGTCTACAACCCCGCTTTCTCCTCCTCCTCCTCCGGCCCCT

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