GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-15 15:23:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Medicago truncatula EST MtBA44G04R1 : T7 end of clone MtBA44G04 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL371517.1:335-354
CCCTGCGGCCTTAACAGCCTTGAAAGCATA335CTCCACTTGAAAGAGACGCCCCTCGGGGGAGAAAATAGTAATGTGACGAT
Trifolium pratense cDNA clone:RCC00407.
BB929061.1:399-418
CCCTGCAGCCTTAACAGCCTTGAAAGCATA399CTCCACTTGAAAGAGACGCCCCTCGGGGGAGAAAATAGTGATGTGACGAT
Trifolium pratense cDNA clone:RCC02390.
BB930701.1:391-410
CCCTGCAGCCTTAACAGCCTTGAAAGCATA391CTCCACTTGAAAGAGACGCCCCTCGGGGGAGAAAATAGTGATGTGACGAT
Trifolium pratense cDNA clone:RCC05695.
BB933326.1:391-410
CCCTGCAGCCTTAACAGCCTTGAAAGCATA391CTCCACTTGAAAGAGACGCCCCTCGGGGGAGAAAATAGTGATGTGACGAT
Trifolium pratense cDNA clone:RCC07733.
BB935007.1:391-410
CCCTGCAGCCTTAACAGCCTTGAAAGCATA391CTCCACTTGAAAGAGACGCCCCTCGGGGGAGAAAATAGTGATGTGACGAT
Trifolium pratense cDNA clone:RCC11423.
BB938197.1:391-410
CCCTGCAGCCTTAACAGCCTTGAAAGCATA391CTCCACTTGAAAGAGACGCCCCTCGGGGGAGAAAATAGTGATGTGACGAT
Trifolium pratense cDNA clone:RCC11919.
BB938630.1:391-410
CCCTGCAGCCTTAACAGCCTTGAAAGCATA391CTCCACTTGAAAGAGACGCCCCTCGGGGGAGAAAATAGTGATGTGACGAT
Medicago truncatula EST, clone mtgmadc120023f01.
AJ502654.1:189-208
ATCGTCACATTACTATTTTCTCCCCCGAGG189GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
Medicago truncatula EST, clone mtgmadc120023g10.
AJ502673.1:189-208
ATCGTCACATTACTATTTTCTCCCCCGAGG189GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
Medicago truncatula EST, clone mtgmadc120038f04.
AJ503810.1:189-208
ATCGTCACATTACTATTTTCTCCCCCGAGG189GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
Medicago truncatula EST MtBA34D04F1 : T3 end of clone MtBA34D04 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL369931.1:142-161
ATCGTCACATTACTATTTTCTCCCCCGAGG142GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
Medicago truncatula EST MtBA45H04F1 : T3 end of clone MtBA45H04 of cDNA library MtBA from root tips of cultivar Jemalong of Medicago truncatula (barrel medic).
AL371697.1:141-160
ATCGTCACATTACTATTTTCTCCCCCGAGG141GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
Medicago truncatula EST MtBC14C08F1 : T3 end of clone MtBC14C08 of cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).
AL383445.1:130-149
ATCGTCACATTACTATTTTCTCCCCCNAGG130GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCATGG
EST317469 MHAM Medicago truncatula/Glomus versiforme mixed EST library cDNA clone pMHAM-39P5, mRNA sequence.
AW585846.1:263-282
ATCGTCACATTACTATTTTCTCCCCCGAGG263GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
EST333686 KV3 Medicago truncatula cDNA clone pKV3-22L10, mRNA sequence.
AW774535.1:152-171
ATCGTCACATTACTATTTTCTCCCCCGAGG152GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
EST392080 GVN Medicago truncatula cDNA clone pGVN-60I17, mRNA sequence.
AW980927.1:164-183
ATCGTCACATTACTATTTTCTCCCCCGAGG164GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
Trifolium pratense cDNA clone:RCE04579.
BB906381.1:21-40
CACTATTTTCTCCCCCGAGG21GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCTGCAGGG
Trifolium pratense cDNA clone:RCC03425.
BB931594.1:653-672
ATCGTCACATCACTATTTTCTCCCCCGAGG653GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCTGCAGGG
Trifolium pratense cDNA clone:RCC11464.
BB938236.1:208-227
ATCGTCACATCACTATTTTCTCCCCCGAGG208GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCTGCAGGG
EST433938 DSLC Medicago truncatula cDNA clone pDSLC-37O10, mRNA sequence.
BF005440.1:54-73
ATCGTCACATTACTATTTTCTCCCCCGAGG54GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
NF036C08DT1F1066 Drought Medicago truncatula cDNA clone NF036C08DT 5', mRNA sequence.
BG450665.1:171-190
ATCGTCACATTACTATTTTCTCCCCCGAGG171GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
EST5312121 GESD Medicago truncatula cDNA clone pGESD7L6 5' end, mRNA sequence.
BI310371.1:167-186
ATCGTCACATTACTATTTTCTCCCCCGAGG167GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
EST589893 KV2 Medicago truncatula cDNA clone pKV2-51L1, mRNA sequence.
BM779317.1:159-178
ATCGTCACATTACTATTTTCTCCCCCGAGG159GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
EST590315 KV2 Medicago truncatula cDNA clone pKV2-52N10, mRNA sequence.
BM779739.1:159-178
ATCGTCACATTACTATTTTCTCCCCCGAGG159GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
NF012E02PH1F1008 Phoma-infected Medicago truncatula cDNA clone NF012E02PH 5', mRNA sequence.
BQ138031.1:187-206
ATCGTCACATTACTATTTTCTCCCCCGAGG187GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
NF017C05PH1F1038 Phoma-infected Medicago truncatula cDNA clone NF017C05PH 5', mRNA sequence.
BQ141222.1:187-206
ATCGTCACATTACTATTTTCTCCCCCGAGG187GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
EST669560 MTUS Medicago truncatula cDNA clone MTUS-13A12, mRNA sequence.
CF068839.1:162-181
ATCGTCACATTACTATTTTCTCCCCCGAGG162GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
s13dSG42D0600058_327812 Glandular trichomes Medicago sativa cDNA, mRNA sequence.
CO514576.1:188-207
ATCGTCACATTACTATTTTCTCCCCCGAGG188GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
s13dNF34C10MJ071_256846 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX531448.1:180-199
ATCGTCACATTACTATTTTCTCCCCCGAGG180GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
s13dNF0MC12MJ098_336183 Methyl Jasmonate-Elicited Root Cell Suspension Culture Medicago truncatula cDNA, mRNA sequence.
CX534890.1:243-262
ATCGTCACATTACTATTTTCTCCCCCGAGG243GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
EST1227961 MTY Medicago truncatula cDNA clone MTYBD60, mRNA sequence.
DW019000.1:274-293
ATCGTCACATTACTATTTTCTCCCCCGAGG274GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
MTGland_A018_2007-05-03/MTGlandA018_F08_027_1 Medicago truncatula A17 glandular trichome Medicago truncatula cDNA, mRNA sequence.
ES612309.1:198-217
ATCGTCACATTACTATTTTCTCCCCCGAGG198GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
MTYCE81TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence.
EV254921.1:184-203
ATCGTCACATTACTATTTTCTCCCCCGAGG184GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
MTYDM90TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence.
EV258660.1:184-203
ATCGTCACATTACTATTTTCTCCCCCGAGG184GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
MTYDX66TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence.
EV259583.1:266-285
ATCGTCACATTACTATTTTCTCCCCCGAGG266GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
ALF-R-09_2007-07-20_1/ALF(R)-9_E19_038_1 Alfalfa (Medicago sativa) Trichome isolated from the stem Medicago sativa cDNA, mRNA sequence.
EX522977.1:239-258
ATCGTCACATTACTATTTTCTCCCCCGAGG239GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
META932TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY474793.1:189-208
ATCGTCACATTACTATTTTCTCCCCCGAGG189GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
Glycyrrhiza uralensis cDNA, clone: kanzou004CD02.f1, 5'-end sequence.
FS269030.1:355-374
ATCGTCACATCACTATTTTCTCCCCTGAGG355GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAAGCTGTTAAGGCTGCTGGG
Raphanus sativus mRNA, clone: RSCS20E04, 5' end sequence.
FY452969.1:121-140
ATCGTCACATCACTATTTTCTCCCCCGAGG121GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCTGCAGGG
Trifolium repens mRNA, clone: WCC06i15_037, unspecified EST.
FY456250.1:140-159
ATCGTCACATCACTATTTTCTCCCCCGAGG140GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCTGCAGGG
Trifolium repens mRNA, clone: WCC07n19_008, unspecified EST.
FY456714.1:57-76
ATCGTCACATCACTATTTTCTCCCCCGAGG57GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCTGCAGGG
Trifolium repens mRNA, clone: WCC15h02_028, unspecified EST.
FY459352.1:139-158
ATCGTCACATCACTATTTTCTCCCCCGAGG139GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCTGCAGGG
Trifolium repens mRNA, clone: WCC27p02_032, unspecified EST.
FY463773.1:273-292
ATCGTCACATCACTATTTTCTCCCCCGAGG273GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCTGCAGGG
METC612TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
GT138104.1:189-208
ATCGTCACATTACTATTTTCTCCCCCGAGG189GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
METCP60TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
GT139806.1:215-234
ATCGTCACATTACTATTTTCTCCCCCGAGG215GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
GT01011C04f Gracilaria tenuistipitata tetrasporophyte EST Gracilaria tenuistipitata var. liui cDNA clone Gt01011C04, mRNA sequence.
HS978830.1:210-229
ATTCAAGAACAACAACGTTTTCGCCGGAAG210GGCGTCTCTTTCAAGTGGAGTACGCCATGGAAGCGATCGGAAACGCAGGC
TSA: Medicago sativa cultivar Chilean F0D_8079 mRNA sequence.
JL874506.1:192-211
ATCGTCACATTACTATTTTCTCCCCCGAGG192GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_10397 mRNA sequence.
JL891574.1:213-232
ATCGTCACATTACTATTTTCTCCCCCGAGG213GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
Medicago truncatula clone MTYFP_FQ_FR_FS1G-F-20 unknown mRNA.
BT053252.1:266-285
ATCGTCACATTACTATTTTCTCCCCCGAGG266GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
Medicago truncatula clone JCVI-FLMt-16A9 unknown mRNA.
BT145109.1:184-203
ATCGTCACATTACTATTTTCTCCCCCGAGG184GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
Medicago truncatula clone JCVI-FLMt-16D4 unknown mRNA.
BT147007.1:184-203
ATCGTCACATTACTATTTTCTCCCCCGAGG184GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG
Medicago truncatula clone JCVI-FLMt-4M14 unknown mRNA.
BT149199.1:189-208
ATCGTCACATTACTATTTTCTCCCCCGAGG189GGCGTCTCTTTCAAGTGGAGTATGCTTTCAAGGCTGTTAAGGCCGCAGGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCCACTTGAAAGAGACGCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCCACTTGAAAGAGACGCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.178 | 0.170 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCACTTGAAAGAGACGCC&k=0&no_gap=0&offset=0&limit=50
1.782 | 1.604 | search_minus_done; http://172.18.8.135:50400/match?q=GGCGTCTCTTTCAAGTGGAG&k=0&no_gap=0&offset=0&limit=43
1.811 | 0.030 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).