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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-14 16:05:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Myrica gale genome assembly, chromosome: 20.
OZ005617.1:3765010-3765029
GAACAGATTGGTGTTCTCGGTTTTCGTATA3765010CTCCATTTGGTGGGAGAGAAATCAGAGATAGCAGACTAGGGCATGTGTTC
Lutzomyia longipalpis isolate SR_M1_2022 chromosome 2.
CP101403.1:2615069-2615088
ACACCCAGGTAGGTCTCTCACTCTCAGATC2615069CTCCATTTGGTGGGAGAGAAGATAAAAACAGGGAGAGAAATATGACAAAA
Criorhina berberina genome assembly, chromosome: 1.
OU862870.1:106743468-106743487
ATTTGGTTTCACATGTAAATTATTGGGAGT106743468CTCCATTTGGTGGGAGAGAAGGGAGGTAGAGGTGTGGGTTGAATTATGTG
Callithrix jacchus chromosome UNK clone CH259-44H12, complete sequence.
AC188056.1:105062-105081
TGCCTAAGTGTCAAATCCTTGTCTTCCCTT105062TTCTCTCCCACCAAATGGAGTTTATTTAATCCTGGGTTACAAGAAGCATT
Streptopelia turtur genome assembly, chromosome: Z.
LR594555.2:53786173-53786192
GGAGACATAAGATGTTAAATTAGTGTCACC53786173TTCTCTCCCACCAAATGGAGGTCAAATGTGCCAAAACCTTACCCATAGCC
Nesoenas mayeri genome assembly, chromosome: Z.
OY720060.1:52725063-52725082
GGAGACATAAGATGTTAAATTAGTGTCACC52725063TTCTCTCCCACCAAATGGAGGTCAAATGTGCCAAAACCTTACCCATAGTC
GM880013B10E01 Gm-r1088 Glycine max cDNA clone Gm-r1088-4825 3', mRNA sequence.
BU547292.1:253-272
TATATATATATATATATATACCCACTGCAA253TTCTCTCCCACCAAATGGAGTCCATGACGACCAGACTCTTCCTCTTCGCA
Xenopus laevis DNA, BAC clone: XLB1-273M15, sequence: XLB1-273M15.b.
GA330592.1:333-352
GTCTGAAAAATAATCCACCGTATTCTGTAT333TTCTCTCCCACCAAATGGAGCACGAAATATTAATGAATATCTTCCAGCAA
Myrica gale genome assembly, chromosome: 1.
OZ005598.1:8322203-8322222
AATAAATAAATAATATTATACCTTTTTTTT8322203TTCTCTCCCACCAAATGGAGGTTTAGAATACATAAAACTTTTTTTAGGAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCCATTTGGTGGGAGAGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCCATTTGGTGGGAGAGAA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.218 | 0.210 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCATTTGGTGGGAGAGAA&k=0&no_gap=0&offset=0&limit=50
0.428 | 0.209 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTCTCCCACCAAATGGAG&k=0&no_gap=0&offset=0&limit=47
0.432 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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