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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 07:45:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene70185_XinShao mRNA sequence.
JR656587.1:105-124
AGGTTCTCCTGGATCCAACACGCATCGTGC105CTCCCATATGTGTTTTCGAGCCCTCAGGCATGAATATAACACAGGGGTTT
TSA: Pyrus x bretschneideri Unigene70186_XinShao mRNA sequence.
JR656588.1:105-124
AGGTTCTCCTGGATCCAACACGCATCGTGC105CTCCCATATGTGTTTTCGAGCCCTCAGGCATGAATATAACACAGGGGTTT
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:33307978-33307997
AGGTTCTCCTGGATCCAACACGCATCGTGC33307978CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:34679741-34679760
AGGTTCTCCTGGATCCAACACGCATCGTGC34679741CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:32051813-32051832
AGGTTCTCCTGGATCCAACACGCATCGTGC32051813CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:32604693-32604712
AGGTTCTCCTGGATCCAACACGCATCGTGC32604693CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143362.1:36269360-36269379
ATGTTCTCCTGGATCCAACACGCATCGTGC36269360CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGCACAGAGATCAGATAA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:34891204-34891223
AGGTTCTCCTGGATCCAACACGCATCGTGC34891204CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Malus hybrid cultivar cultivar SH6 chromosome 5.
CP143379.1:33569238-33569257
ATGTTCTCCTGGATCCAACACGCATCGTGC33569238CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGCACAGAGATCAGATAA
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:31230271-31230290
AGGTTCTCCTGGATCCAACACGCATCGTGC31230271CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Malus sylvestris genome assembly, chromosome: 5.
OU696507.1:36392289-36392308
ATGTTCTCCTGGATCCAACACGCATTGTGC36392289CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGCACAGAGATCAGATAA
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:33834383-33834402
AGGTTCTCCTGGATCCAACACGCATCGTGC33834383CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Malus domestica genome assembly, chromosome: 10.
OU696686.1:34073105-34073124
AGGTTCTCCTCGATCCAACACGCATCGTGC34073105CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Malus domestica genome assembly, chromosome: 5.
OU744546.1:35586634-35586653
ATGTTCTCCTGGATCCAACACGCATCGTGC35586634CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGCACAGAGATCAGATAA
Malus domestica genome assembly, chromosome: 10.
OU744551.1:33921877-33921896
AGGTTCTCCTGGATCCAACACGCATCGTGC33921877CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Malus domestica genome assembly, chromosome: 5.
OU744957.1:35725894-35725913
ATGTTCTCCTGGATCCAACACGCATCGTGC35725894CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGCACAGAGATCAGATAA
Malus domestica genome assembly, chromosome: 10.
OU744962.1:34959084-34959103
AGGTTCTCCTGGATCCAACACGCATCGTGC34959084CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Malus domestica genome assembly, chromosome: 5.
OU744995.1:36862385-36862404
ATGTTCTCCTGGATCCAACACGCATCGTGC36862385CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGCACAGAGATCAGATAA
Malus domestica genome assembly, chromosome: 10.
OU745000.1:33745925-33745944
AGGTTCTCCTGGATCCAACACGCATCGTGC33745925CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:32411967-32411986
AGGTTCTCCTGGATCCAACACGCATCGTGC32411967CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Draba incana genome assembly, chromosome: 11.
OY755212.1:34159656-34159675
AAGTTCTTCTTGAGCCTAACCTCATAGTGC34159656CTCCCATATGTGTTTTCGAGCCCTGCTTCAAACAAAATTTACACGAAATC
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:32438184-32438203
AGGTCCTCCTGGATCCAACACGCATCGTGC32438184CTCCCATATGTGTTTTCGAGCCCTGCTTACATGGTACGGAGATCAGATAA
Mdfw2016p16.y1 Mdfw Malus domestica cDNA clone Mdfw2016p16 5' similar to TR:Q9SY26 Q9SY26 T17H7.12, mRNA sequence.
CN490487.1:15-34
TTCATGCCTGAGGG15CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCCAGGAGAACCT
Mdfrt3104c18.y1 Mdfrt Malus domestica cDNA clone Mdfrt3104c18 5' similar to TR:O65445 O65445 CTP SYNTHASE LIKE PROTEIN, mRNA sequence.
CV631145.1:487-506
AAACCCCTGTGTTATATTCATGCCTGAGGG487CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCCAGGAG
Mdst6016d05.y1 Mdst Malus domestica cDNA clone Mdst6016d05 5' similar to TR:O65445 O65445 CTP SYNTHASE LIKE PROTEIN, mRNA sequence.
CV658100.1:375-394
AAACCCCTGTGTTATATTCATGCCTGAGGG375CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCCAGGAGAACCT
Mdrta1017C03.g1 Apple_EST_Mdrta Malus domestica cDNA similar to ref|NP_193765.2| CTP synthase (UTP--ammonia ligase), putative [Arabidopsis thaliana], mRNA sequence.
DT002752.1:159-178
AAATCCCTGTGTTATTTTCATGCCTGAGGG159CTCGAAAACACATATGGGAGGCACAATGCGTGTTGGATCCAGGAGAACAT
000823AAFB001937HT (AAFB) Royal Gala apple skin peel, tree-ripened fruit 150 DAFB Malus domestica cDNA clone AAFB001937, mRNA sequence.
EB115152.1:298-317
AAACCCCTGTGTTATATTCATGCCTGAGGG298CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCGAGGAGAACCT
010425AASA006412HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA006412, mRNA sequence.
EB124202.1:93-112
AAACCCCTGTGTTATATTCATGCCTGAGGG93CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCCAGGAGAACCT
010421AASA005485HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA005485, mRNA sequence.
EB124328.1:93-112
AAACCCCTGTGTTATATTCATGCCTGAGGG93CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCCAGGAGAACCT
010602AAXA003136HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA003136, mRNA sequence.
EB135565.1:119-138
AAACCCCTGTGTTATATTCATGCCTGAGGG119CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCGAGGAGAACCT
Md0880 Venturia inaequalis challenged cDNA suppression subtractive hybridization library Malus domestica cDNA similar to CTP synthase like protein, mRNA sequence.
FE969521.1:367-386
AAACCCCCGTGTTATATTCATGCCTGAGGG367CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCGAGGAGAACCT
Mdrtc1028B11.g1 Apple_EST_Mdrtc Malus hybrid rootstock cDNA 5' similar to ref|NP_193765.2| CTP synthase (UTP--ammonia ligase), putative [Arabidopsis thaliana], mRNA sequence.
GO500196.1:617-636
AAATCCCTGTGTTATATTCATGCCTGAGGG617CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCCAGGAGAACAT
Mdfrjg3500B24.g1 Apple_EST_Mdfrjg Malus domestica cDNA 5' similar to ref|NP_193765.2| CTP synthase (UTP--ammonia ligase), putative [Arabidopsis thaliana], mRNA sequence.
GO536947.1:489-508
AAACCCCTGTGTTATATTCATGCCTGAGGG489CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCGAGGAGAACCT
Malus hybrid cultivar cultivar Flame chromosome 5.
CP141914.1:10142628-10142647
CTGATCTCTGTGCCATGTAAGCAAGCAGGG10142628CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCCAGGAGAACAT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141957.1:10100582-10100601
TTATCTGATCTCTGTGCCATGTAAGCAGGG10100582CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCCAGGAGAACAT
Malus hybrid cultivar cultivar Royalty chromosome 5.
CP141974.1:10866038-10866057
TTATCTGATCTCTGTGCCATGTAAGCAGGG10866038CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCCAGGAGAACAT
Potentilla anserina genome assembly, chromosome: 3.
OW176983.1:7602479-7602498
TATCTGATCTCTGTATTATCATAAGCAGGG7602479CTCGAAAACACATATGGGAGGTACCATGCGCCTTGGATCCAGGAGAACAT
Malus x robusta genome assembly, chromosome: 2.
OY720326.1:10369811-10369830
TTATCTGATCTCTGTGCCATGTAAGCAGGG10369811CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCCAGGAGAACAT
Draba incana genome assembly, chromosome: 9.
OY755210.1:3308335-3308354
GATTTCGTGTAAATTTTGTTTGAAGCAGGG3308335CTCGAAAACACATATGGGAGGTACTATGAGGTTAGGCTCAAGAAGAACTT
Crataegus laevigata genome assembly, chromosome: 2.
OY756939.1:11302749-11302768
TTATCTGATCTCTGTGCCATGTAACCAGGG11302749CTCGAAAACACATATGGGAGGCACAATGCGTGTTGGATCCAGGAGAACAT
Pyrus communis genome assembly, chromosome: 2.
OY757069.1:8253756-8253775
TTATCTGATATCTGTGCCATGTAAGCAGGG8253756CTCGAAAACACATATGGGAGGCACGATGCGTGTTGGATCCAGGAGAACAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCCCATATGTGTTTTCGAG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCCCATATGTGTTTTCGAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.115 | 0.107 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCCATATGTGTTTTCGAG&k=0&no_gap=0&offset=0&limit=50
0.660 | 0.545 | search_minus_done; http://172.18.8.135:50400/match?q=CTCGAAAACACATATGGGAG&k=0&no_gap=0&offset=0&limit=28
0.673 | 0.013 | cgi_end;

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