GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2026-03-05 14:05:51, GGGenome : DDBJ release 139.0 (Sep, 2025)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

0091373 Brassica napus Cold acclimation - dark Brassica napus cDNA, mRNA sequence.
EV193888.1:479-500
GTGTAGCTCGATAATCCCTTCATCGTCCAG479CTCCGAAACCTCGTCCATTATCCCCTTAAACCACTCAAACGATCCTTGCTCT
RS1AC87JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EW719485.1:515-536
GTGTAGCTCGATCACTCCTTCCTCGTCCAG515CTCCGAAACCTCGTCCATTATCCCCTTAAACCACTCAAACGAGCCTTGCTCT
RS2D553JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX901920.1:511-532
GTGTAGCTCGATCACTCCTTCCTCGTCCAG511CTCCGAAACCTCGTCCATTATCCCCTTAAACCACTCAAACGATCCTTGCTCT
RR4E538JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY920323.1:504-525
GTGTAGCTCGATCACTCCTTCCTCGTCCAG504CTCCGAAACCTCGTCCATTATCCCCTTAAACCACTCAAACGATCCTTGCTCT
RR3GV51JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD976820.1:540-561
GTGTAGCTCGATCACTCCTTCCTCGTCCAG540CTCCGAAACCTCGTCCATTATCCCCTTAAACCACTCAAACGAGCCTTGCTCT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_9453.
FX661536.1:583-604
GTGTAGCTCGATCACTTCTTCCTCGTCCAG583CTCCGAAACCTCGTCCATTATCCCCTTAAACCACTCAAACGAGCCTTGCTCT
TSA: Pachycladon fastigiatum 106889_376_10798_7_41.Pafaleaf mRNA sequence.
JP997280.1:315-336
GTGAAGCTCGATGATTCCTTCCTCGTCCAA315CTCCGAAACCTCGTCCATTATCCCCTTGAACCACTCGAACGATCCTTGTTCC
BOGIC09TR BOGI Brassica oleracea genomic clone BOGIC09, genomic survey sequence.
BH437013.1:1-22
1CTCCGAAACCTCGTCCATTATCCCCTTAAACCACTCAAACGATCCTTGCTCT
BOMOC65TR BO_2_3_KB Brassica oleracea genomic clone BOMOC65, genomic survey sequence.
BH691179.1:214-235
GTGTAGCTCGATAATCCCTTCATCGTCCAG214CTCCGAAACCTCGTCCATTATCCCCTTAAACCACTCAAACGATCCTTGCTCT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:6603329-6603350
GTGTAGCTCGATAATCCCTTCATCGTCCAG6603329CTCCGAAACCTCGTCCATTATCCCCTTAAACCACTCAAACGATCCTTGCTCT
Eutrema japonicum cultivar Magic isolate CNU_PCGL_DJ_WASABI_2024 chromosome A07.
CP163467.1:8165890-8165911
GTGGAGCTCGATCACTCCTTCCTCGTCCAG8165890CTCCGAAACCTCGTCCATTATCCCCTTGAACCACTCGAACGATCCCTGTTCC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:14036531-14036552
GTGTAGCTCGATCACTCCTTCCTCGTCCAG14036531CTCCGAAACCTCGTCCATTATCCCCTTAAACCACTCAAACGAGCCTTGCTCT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:14036531-14036552
GTGTAGCTCGATCACTCCTTCCTCGTCCAG14036531CTCCGAAACCTCGTCCATTATCCCCTTAAACCACTCAAACGAGCCTTGCTCT
Matthiola sinuata genome assembly, chromosome: 5.
OZ209985.1:214133286-214133307
GTGGAGCTCGATAATTCCTTCCTCGTCCAT214133286CTCCGAAACCTCGTCCATTATCCCTTTAAACCACTCGAAGGATCCTTGTTCC
Bn01b_03j22_A Bn01b_AAFC_ECORC_transgenic_Brassica_napus_overexpressing_BNCBF17_c onstitutively_frost_tolerant Brassica napus cDNA clone Bn01b_03j22, mRNA sequence.
CB686108.1:375-396
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG375GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
Bn01b_04i19_A Bn01b_AAFC_ECORC_transgenic_Brassica_napus_overexpressing_BNCBF17_c onstitutively_frost_tolerant Brassica napus cDNA clone Bn01b_04i19, mRNA sequence.
CB686237.1:538-559
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG538GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
Brassica oleracea var. viridis mRNA, clone: KALE-098D21, 3' end sequence.
DK552703.1:120-141
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG120GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
Brassica oleracea var. viridis mRNA, clone: KALE-121D09, 3' end sequence.
DK561466.1:164-185
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG164GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
OL5868R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL5868, mRNA sequence.
EH423156.1:562-583
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG562GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
BNSCS2CT_UP_222_C10_28APR2007_076 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV031996.1:369-390
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG369GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
RS1AC87TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW714661.1:174-195
AGAGCAAGGCTCGTTTGAGTGGTTTAAGGG174GATAATGGACGAGGTTTCGGAGCTGGACGAGGAAGGAGTGATCGAGCTACAC
RS2D553TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX898332.1:536-557
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG536GATAATGGACGAGGTTTCGGAGCTGGACGAGGAAGGAGTGATCGAGCTACAC
RR4E538TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY924710.1:327-348
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG327GATAATGGACGAGGTTTCGGAGCTGGACGAGGAAGGAGTGATCGAGCTACAC
RR3GC29TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD979430.1:376-397
AGAGCAAGGATCGTTTGAATGGTTTAAGGG376GATAATGGACGAGGTTTCGGAGCTGGACGAGGAAGGAGTGATCGAGCTACAC
RR3GV51TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD981028.1:581-602
AGAGCAAGGCTCGTTTGAGTGGTTTAAGGG581GATAATGGACGAGGTTTCGGAGCTGGACGAGGAAAGAGTGATCGAGCTACAC
TSA: Raphanus sativus RS00692 mRNA sequence.
JT785239.1:2560-2581
AGAGCAAGGCTCGTTTGAGTGGTTTAAGGG2560GATAATGGACGAGGTTTCGGAGCTGGACGAGGAAGGAGTGATCGAGCTACAC
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:34819127-34819148
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG34819127GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
Brassica napus cultivar Xiang5A chromosome 2.
CP151897.1:33573612-33573633
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG33573612GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
Brassica napus cultivar Xiang5A chromosome 12.
CP151907.1:59810454-59810475
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG59810454GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
Eutrema japonicum cultivar Magic isolate CNU_PCGL_DJ_WASABI_2024 chromosome B07.
CP163474.1:47211344-47211365
GGAACAAGGATCGTTCGAGTGGTTCAAGGG47211344GATAATGGACGAGGTTTCGGAGCTGGACGAGGAAGGAGTGATCGAGCTCCAC
Brassica napus genome assembly, chromosome: C02.
HG994366.1:55871370-55871391
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG55871370GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:57013000-57013021
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG57013000GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
Brassica napus respiratory burst oxidase protein D-1.1 (RBOHD-1.1) mRNA, complete cds.
MF039314.1:2421-2442
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG2421GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
Brassica oleracea genome assembly, chromosome: 2.
OZ281585.1:59968294-59968315
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG59968294GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
Brassica oleracea genome assembly, chromosome: 2.
OZ281595.1:61960832-61960853
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG61960832GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
Brassica rapa subsp. trilocularis genome assembly, chromosome: 2.
OZ282416.1:29576932-29576953
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG29576932GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC
Brassica oleracea var. botrytis genome assembly, chromosome: 2.
OZ282427.1:62138044-62138065
AGAGCAAGGATCGTTTGAGTGGTTTAAGGG62138044GATAATGGACGAGGTTTCGGAGCTGGACGATGAAGGGATTATCGAGCTACAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCCGAAACCTCGTCCATTATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCCGAAACCTCGTCCATTATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.641 | 0.632 | search_plus_done; http://172.18.8.135:50900/match?q=CTCCGAAACCTCGTCCATTATC&k=0&no_gap=0&offset=0&limit=50
1.445 | 0.804 | search_minus_done; http://172.18.8.135:50900/match?q=GATAATGGACGAGGTTTCGGAG&k=0&no_gap=0&offset=0&limit=36
1.460 | 0.015 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).