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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-13 02:49:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

oeh32g11.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ022979.1:652-671
TCCACGGCTGCATCCGAAGGCAGGCGTTTA652CTCCGGACCGTATCTATCTACCTCACTCTCGAAAAAAAAAACCAGGAAGN
lky33b02.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ061723.1:124-143
TCCACGGCTGCATCCGAAGGCAGGCGTTTA124CTCCGGACCGTATCTATCTACCTCACTCTCGAAAAAAAAAACCAGGAAGA
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:54248145-54248164
TCCACGGCTGCATCCGAAGGCAGGCGTTTA54248145CTCCGGACCGTATCTATCTACCTCACTCTCGAAAAAAAAAACCAGGAAGA
Brassica napus genome assembly, chromosome: C06.
HG994370.1:48289705-48289724
TCCACGGCTGCATCCGAAGGCAGGCGTTTA48289705CTCCGGACCGTATCTATCTACCTCACTCTCGAAAAAAAAAACCAGGAAGA
Rhinatrema bivittatum genome assembly, chromosome: 2.
LR584388.1:210145471-210145490
GTGACGAAAGTTTAATATTCTGTCGTTTGG210145471TAGATAGATACGGTCCGGAGGGCGTGGCCACGCCCCCGGGCCGTAACTAC
Brassica rapa subsp. pekinensis clone KBrB096A21, complete sequence.
CU695272.1:110779-110798
TTCTTCCTGTTTTTTTTTCCGAGAGTGAGG110779TAGATAGATACGGTCCGGAGTAAAAATAGTGCTACCTCTTCATCACATGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB033O04, complete sequence.
AC189307.2:2323-2342
TTCTTCCTGTTTTTTTTTCCGAGAGTGAGG2323TAGATAGATACGGTCCGGAGTAAAAATAGTGCTACCTCTTCATCACATGT
Papaver somniferum cultivar Roxanne chromosome 1.
CP048213.1:199526836-199526855
AGATTCTTTAGTTCCTTCCAAGGTTTTGCG199526836TAGATAGATACGGTCCGGAGTAAAGGTTTTGTGGGTACATCTCTGGTAAC
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:25333106-25333125
TCTTCCTGTTTTTTTTTTCCGAGAGTGAGG25333106TAGATAGATACGGTCCGGAGTAAACGCCTGCCTTTGGATTCAGCCGTGGA
Brassica napus genome assembly, chromosome: A04.
HG994358.1:19814295-19814314
TCTTCTTCCTGTTTTTTTCCGACAGCGAGG19814295TAGATAGATACGGTCCGGAGTAACGGTTAATGTTTGTTTCTGCCGCTGCT
Brassica rapa genome, scaffold: A04.
LR031576.1:18406535-18406554
TTCCTGTTTTTTTTTTTTCCGAGAGAGAGG18406535TAGATAGATACGGTCCGGAGTAAACGCCTGCCTTTGGATTCAGCCGTGGA
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:18829098-18829117
TTCCTGTTTTTTTTTTTTCCGAGAGAGAGG18829098TAGATAGATACGGTCCGGAGTAAACGCCTGCCTTTGGATTCAGCCGTGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCCGGACCGTATCTATCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCCGGACCGTATCTATCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.126 | 0.117 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCGGACCGTATCTATCTA&k=0&no_gap=0&offset=0&limit=50
0.157 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=TAGATAGATACGGTCCGGAG&k=0&no_gap=0&offset=0&limit=46
0.162 | 0.005 | cgi_end;

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