GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 04:56:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

MOS057G07.R MOS Physcomitrella patens genomic 3', genomic survey sequence.
KS618210.1:175-194
TCTTCGTCCTCGGTTGTAAACATGGCTGGT175CTCCGTCCAGTCAAAAGCTCAAGCAAAACTATACCAAAGCTGTAGACATC
Daucus carota subsp. sativus cultivar DH1 chromosome 2.
CP093344.1:46994456-46994475
TCGCTGGGTCCTTGGCTCAGGTCCACAGCT46994456CTCCGTCCAGTCAAAAGCTCAAGTAAAACAACTCCAAATGCATAAATGTC
Daucus carota isolate Kuroda chromosome 2.
CP125302.1:44882255-44882274
TCGCTGGGTCCTTGGCTCAGGTCCACAGCT44882255CTCCGTCCAGTCAAAAGCTCAAGTAAAACAACTCCAAATGCATAAATGTC
Hedera helix genome assembly, chromosome: 12.
OX359275.1:5131358-5131377
TCGTTGGGTCCTTGGTTCAGGTCGATGGCT5131358CTCCGTCCAGTCAAAAGCTCAAGCAGAACCACTCCAAATGCATAAACATC
Oldenlandia corymbosa var. corymbosa genome assembly, chromosome: 2.
OX459119.1:1164055-1164074
TCATTTGGTCCTTGGTGTAGGTCAACTGCC1164055CTCCGTCCAGTCAAAAGCTCCAGCAGAACGACGCCAAATGCATATACATC
Ilex aquifolium genome assembly, chromosome: 12.
OX637402.1:19357435-19357454
TCATAGGGTCCTTGGTTCAGGTCCACCGCT19357435CTCCGTCCAGTCAAAAGCTCAAGCAGAACAACCCCAAATGCATAAACATC
Rhododendron vialii isolate Sample 1 chromosome 12a.
CP127076.1:6377355-6377374
GATGTGTATGCATTTGGAGTTGTTCTGCTT6377355GAGCTTTTGACTGGACGGAGAGCTGTGGACCTGAACCAAGGACCCAGTGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCCGTCCAGTCAAAAGCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCCGTCCAGTCAAAAGCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.164 | 0.156 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCGTCCAGTCAAAAGCTC&k=0&no_gap=0&offset=0&limit=50
0.195 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=GAGCTTTTGACTGGACGGAG&k=0&no_gap=0&offset=0&limit=44
0.196 | 0.001 | cgi_end;

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