GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:02:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Cannabis sativa PK19289.1_1.CasaPuKu mRNA sequence.
JP450038.1:99-118
GACAGTCATGGCCAAAAACACTCTAGACTC99CTCCTCCTCAAAACGACACTTCCACTGGACCAAGAAGGTCGGACACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq1.
LA670395.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq2.
LA670396.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq3.
LA670397.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq4.
LA670398.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq5.
LA670399.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq6.
LA670400.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq7.
LA670401.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq8.
LA670402.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq12.
LA670405.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq13.
LA670406.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq14.
LA670407.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq15.
LA670408.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq16.
LA670409.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq17.
LA670410.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq18.
LA670411.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq19.
LA670412.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq20.
LA670413.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq21.
LA670414.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq22.
LA670415.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq23.
LA670416.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq25.
LA670417.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq26.
LA670418.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq27.
LA670419.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq28.
LA670420.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq29.
LA670421.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq30.
LA670422.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq31.
LA670423.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq32.
LA670424.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq33.
LA670425.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq36.
LA670426.1:1313-1332
GACAGTCATGGCCAAAAACAATCTAGACTC1313CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq37.
LA670427.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq38.
LA670428.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq40.
LA670429.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq41.
LA670430.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq42.
LA670431.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq43.
LA670432.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
TSA: Humulus lupulus var. lupulus mRNA, contig: comp296140_c0_seq46.
LA670433.1:1298-1317
GACAGTCATGGCCAAAAACAATCTAGACTC1298CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG
Humulus lupulus genome assembly, chromosome: 4.
OY720651.1:137682033-137682052
GACAGTCATGGCCAAAAACAATCTAGACTC137682033CTCCTCCTCAAAACGACACTTCCACTGGACGAAGAAGGTCGGAAACGAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCCTCCTCAAAACGACACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCCTCCTCAAAACGACACT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.718 | 0.709 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCTCCTCAAAACGACACT&k=0&no_gap=0&offset=0&limit=50
0.761 | 0.043 | search_minus_done; http://172.18.8.135:50400/match?q=AGTGTCGTTTTGAGGAGGAG&k=0&no_gap=0&offset=0&limit=11
0.761 | 0.000 | cgi_end;

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