GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:02:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 1782 from patent US 8067671.
GY534844.1:3019-3040
CCATCGAGAAACTTTTCTTAGTAATTCCCA3019CTCCTCTTCATCTCAATCAATCCACCTTAATTGGCCGGCACGTTGCGTTGTT
Sequence 1782 from patent US 8088976.
GY862279.1:3019-3040
CCATCGAGAAACTTTTCTTAGTAATTCCCA3019CTCCTCTTCATCTCAATCAATCCACCTTAATTGGCCGGCACGTTGCGTTGTT
TSA: Cajanus cajan cultivar UPAS 120 contig23180.UPAS mRNA sequence.
EZ640897.1:864-885
GCCAAGGTCGTTTTAGGCCCCACATCCATC864CTCCTCTTCATCTCAATCAATCCCCTTTATTTTTTCTTTTCTCTTTCTCTTT
TSA: Cajanus cajan cultivar Asha contig11709.Asha mRNA sequence.
EZ659573.1:287-308
GCCAAGGTCGTTTTAGGCCCCACATCCATC287CTCCTCTTCATCTCAATCAATCCCCTTTATTTTTTTCTTTTCTCTTTCTCTT
Heterodera glycines isolate TN10 chromosome 4.
CP049708.1:978380-978401
CCCTCGAGAAACTTTTCTTAGTAATTCCCA978380CTCCTCTTCATCTCAATCAATCCACCTTAATTGGTCGGCACGTTGCGTTGTT
Sequence 75931 from patent US 8067671.
GY608993.1:626-647
AACAACGCAACGTGCCGGCCAATTAAGGTG626GATTGATTGAGATGAAGAGGAGTGGGAATTACTAAGAAAAGTTTCTCGATGG
Sequence 75931 from patent US 8088976.
GY936428.1:626-647
AACAACGCAACGTGCCGGCCAATTAAGGTG626GATTGATTGAGATGAAGAGGAGTGGGAATTACTAAGAAAAGTTTCTCGATGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCCTCTTCATCTCAATCAATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCCTCTTCATCTCAATCAATC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.150 | 0.141 | search_plus_done; http://172.18.8.135:50400/match?q=CTCCTCTTCATCTCAATCAATC&k=0&no_gap=0&offset=0&limit=50
0.225 | 0.076 | search_minus_done; http://172.18.8.135:50400/match?q=GATTGATTGAGATGAAGAGGAG&k=0&no_gap=0&offset=0&limit=45
0.227 | 0.001 | cgi_end;

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