GGGenome | Results

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2025-04-06 00:44:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

TSA: Elaeis guineensis isotig02603.Elguifruit mRNA sequence.
JO089856.1:1030-1049

CCCCGCCAGCGGCCGCCCCGCTTCCACATC1030CTCGAAGCTCATCGTCTCTCGCTCCTTCCTCAAATCCTCCTCCAAAGACG

TSA: Elaeis guineensis isotig02604.Elguifruit mRNA sequence.
JO089857.1:1030-1049

CCCCGCCAGCGGCCGCCCCGCTTCCACATC1030CTCGAAGCTCATCGTCTCTCGCTCCTTCCTCAAATCCTCCTCCAAAGACG

TSA: Elaeis guineensis isotig02605.Elguifruit mRNA sequence.
JO089858.1:1060-1079

CCCCGCCAGCGGCCGCCCCGCTTCCACATC1060CTCGAAGCTCATCGTCTCTCGCTCCTTCCTCAAATCCTCCTCCAAAGACG

TSA: Elaeis guineensis isotig02606.Elguifruit mRNA sequence.
JO089859.1:1060-1079

CCCCGCCAGCGGCCGCCCCGCTTCCACATC1060CTCGAAGCTCATCGTCTCTCGCTCCTTCCTCAAATCCTCCTCCAAAGACG

EoEST0331 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-262 5' similar to Syntaxin-like protein, mRNA sequence.
EL595301.1:243-262

CGTCTTTGGAGGAGGATTTGAGGAAGGAGC243GAGAGACGATGAGCTTCGAGGATGTGGAAGCGGGGCGGCCGCTGGCGGGG

OPVM00716 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone 89-F05-T3.seq, mRNA sequence.
EL687110.1:89-108

CGTCTTTGGAGGAGGATTTGAGGAAGGAGC89GAGAGACGATGAGCTTCGAGGATGTGGAAGCGGGGCGGCCGCTGGCGGGG

pOP-EO03035 EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO03035 similar to Syntaxin, mRNA sequence.
ES324086.1:161-180

CGTCTTTGAAGGAGGATTTGAGGAAGGAGC161GAGAGACGATGAGCTTCGAGGATGTGGAAGCGGGGCGGCCGCTGGCGGGG

pOP-EO03035_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO03035 5', mRNA sequence.
EY408538.1:161-180

CGTCTTTGAAGGAGGATTTGAGGAAGGAGC161GAGAGACGATGAGCTTCGAGGATGTGGAAGCGGGGCGGCCGCTGGCGGGG

Elaeis guineensis EST, clone (6lib)_isotig28388.
LM621843.1:243-262

CGTCTTTGGAGGAGGATTTGAGGAAGGAGC243GAGAGACGATGAGCTTCGAGGATGTGGAAGCGGGGCGGCCGCTGGCGGGG

Hedera helix genome assembly, chromosome: 9.
OX359272.1:50722871-50722890

AGTCCACGGTCGGTTTGTCGTCAATGGAAA50722871GAGAGACGATGAGCTTCGAGTAACCATGCATGGACATAAGAAAAGCTTTC

Clistopyga incitator genome assembly, chromosome: 8.
OX382178.1:11126157-11126176

AAACAAAGTTGAACATTGCCGGGTTCTCAA11126157GAGAGACGATGAGCTTCGAGAATAAAAGTTTCCATCCGCACAACGGCATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.128 | 0.119 | search_plus_done; http://172.18.8.135:50400/match?q=CTCGAAGCTCATCGTCTCTC&k=0&no_gap=0&offset=0&limit=50
0.515 | 0.388 | search_minus_done; http://172.18.8.135:50400/match?q=GAGAGACGATGAGCTTCGAG&k=0&no_gap=0&offset=0&limit=46
0.520 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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