GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:43:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2F496JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD573796.1:573-596
CGGCGGCAGACCAAGATCGTCGTCGGAAGC573CTCGAGAAGGTAACCGAGATCCGGCTGGGTCTCTTGCGTAACCGTCGAAGATAA
Raphanus sativus mRNA, clone: RSCF02F03, 5' end sequence.
FY428391.1:595-618
CGGCGGCAGACCAAGCTCGTCGTCGGAAGC595CTCGAGAAGGTAACCGAGATCCGGCTGGGTCTCTTGCGTAACCGTCGAAGATAA
Raphanus sativus mRNA, clone: RSCF09J13, 5' end sequence.
FY430267.1:595-618
CGGCGGCAGACCAAGCTCGTCGTCGGAAGC595CTCGAGAAGGTAACCGAGATCCGGCTGGGTCTCTTGCGTAACCGTCGAAGATAA
Raphanus sativus mRNA, clone: RSCR11J04, 5' end sequence.
FY443259.1:490-513
CGGCGGCAGACCAAGCTCGTCGTCGGAAGC490CTCGAGAAGGTAACCGAGATCCGGCTGGGTCTCTTGCGTAACCGTCGAAGATAA
Elaeis guineensis EST, clone (6lib)_isotig15758.
LM618922.1:1319-1342
CGGCGGGAGGCCAAGCTCGTCATCGGAGGC1319CTCGAGAAGGTAACCGAGATCCGGTTGGCCGAGATTTTCAAAATCGGCCGGCGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_6144.
FX793124.1:460-483
CGGCGGCAGACCAAGCTCGTCGTCGGAAGC460CTCGAGAAGGTAACCGAGATCCGGCTGGGTCTCTTGCGTAACCGTCGAAGATAA
TSA: Elaeis guineensis isotig10936.Elguifruit mRNA sequence.
JO098163.1:428-451
CGGCGGGAGGCCAAGCTCGTCATCGGAGGC428CTCGAGAAGGTAACCGAGATCCGGTTGGCCGAGATTTTCAAAATCGGCCGGCGG
TSA: Nothofagus nervosa isotig01108 mRNA sequence.
JT782667.1:316-339
CGGCGGGAGGCCGAGTTCGTCGTCCGAAGC316CTCGAGAAGGTAACCGAGATCCGGCTGGGACTCGCCGGGATCCGAAGTCTCATC
OPSC00473 Elaeis guineensis Suspension cell cultures Elaeis guineensis cDNA clone 187-A10-T3.seq, mRNA sequence.
EL688718.1:191-214
CCGCCGGCCGATTTTGAAAATCTCGGCCAA191CCGGATCTCGGTTACCTTCTCGAGGCCTCCGATGACGAGCTTGGCCTCCCGCCG
RS2F496TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD569627.1:177-200
TTATCTTCGACGGTTACGCAAGAGACCCAG177CCGGATCTCGGTTACCTTCTCGAGGCTTCCGACGACGATCTTGGTCTGCCGCCG
Elaeis guineensis clone estEgSNP57 uncharacterized protein mRNA, partial cds.
JX438720.1:386-409
CCGCCGGCCGATTTTGAAAATCTCGGCCAA386CCGGATCTCGGTTACCTTCTCGAGGCCTCCGATGACGAGCTTGGCCTCCCGCCG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCGAGAAGGTAACCGAGATCCGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCGAGAAGGTAACCGAGATCCGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.640 | 0.632 | search_plus_done; http://172.18.8.135:50400/match?q=CTCGAGAAGGTAACCGAGATCCGG&k=0&no_gap=0&offset=0&limit=50
0.834 | 0.194 | search_minus_done; http://172.18.8.135:50400/match?q=CCGGATCTCGGTTACCTTCTCGAG&k=0&no_gap=0&offset=0&limit=42
0.836 | 0.002 | cgi_end;

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