GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 09:33:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

odf85h09.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH957977.1:311-330
CTGTTTGATAAGTTTCTGATAAACGAAGCT311CTCGATATGATCGAAGCTGCCGGTGGCTCATTTCATTTGGCTAAATGTGA
Brassica rapa subsp. pekinensis clone KBrH101K10, complete sequence.
FP102281.1:7541-7560
CTATTTGATAAGTTTCTGATAAACGAAGCT7541CTCGATATGATCGAAGCTGCCGGTGGCTCATTTCATTTGGCTAAATGTGA
Brassica oleracea lysine-ketoglutarate reductase/saccharopine dehydrogenase gene, partial cds.
AF191667.1:201-220
CTGTTTGATAAGTTTCTAATAAACGAAGCT201CTCGATATGATCGAAGCTGCCGGTGGCTCATTTCATTTGGCTAAATGTGA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:2335758-2335777
CTATTTGATAAGTTTCTGATAAACGAAGCT2335758CTCGATATGATCGAAGCTGCCGGTGGCTCATTTCATTTGGCTAAATGTGA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:2277744-2277763
CTATTTGATAAGTTTCTGATAAACGAAGCT2277744CTCGATATGATCGAAGCTGCCGGTGGCTCATTTCATTTGGCTAAATGTGA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:2897387-2897406
CTGTTTGATAAGTTTCTAATAAACGAAGCT2897387CTCGATATGATCGAAGCTGCCGGTGGCTCATTTCATTTGGCTAAATGTGA
Brassica rapa genome, scaffold: A01.
LR031571.1:2271069-2271088
CTATTTGATAAGTTTCTGATAAACGAAGCT2271069CTCGATATGATCGAAGCTGCCGGTGGCTCATTTCATTTGGCTAAATGTGA
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:2844422-2844441
CTGTTTGATAAGTTTCTAATAAACGAAGCT2844422CTCGATATGATCGAAGCTGCCGGTGGCTCATTTCATTTGGCTAAATGTGA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:2271192-2271211
CTATTTGATAAGTTTCTGATAAACGAAGCT2271192CTCGATATGATCGAAGCTGCCGGTGGCTCATTTCATTTGGCTAAATGTGA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:54205584-54205603
TCACATTTAGCCAAATGAAATGAGCCACCG54205584GCAGCTTCGATCATATCGAGAGCTTCGTTTATTAGAAACTTATCAAACAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCGATATGATCGAAGCTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCGATATGATCGAAGCTGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.129 | 0.120 | search_plus_done; http://172.18.8.135:50400/match?q=CTCGATATGATCGAAGCTGC&k=0&no_gap=0&offset=0&limit=50
0.153 | 0.025 | search_minus_done; http://172.18.8.135:50400/match?q=GCAGCTTCGATCATATCGAG&k=0&no_gap=0&offset=0&limit=41
0.154 | 0.001 | cgi_end;

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