GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:42:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_10848.
FX701962.1:888-907
ATCTGTTTTGAGGTACTTGCATTGACGGCT888CTCGTTCACCACCTCTGCTACTTCCTTCCACTGTTGCTGCTTCAACGTCC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_8819.
FX736720.1:796-815
ATCTGTTTTGAGGTACTTGCATTGACGGCT796CTCGTTCACCACCTCTGCTACTTCCTTCCACTGTTGCTGCTTCAACGTCC
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:9674498-9674517
ATCTGTTTTGAGGTACTTGCATTGACGGCT9674498CTCGTTCACCACCTCTGCTACTTCCTTCCACTGTTGCTGCTTCAACGTCC
Brassica napus genome assembly, chromosome: A05.
HG994359.1:9708087-9708106
ATCTGTTTTGAGGTACTTGCATTGACGGCT9708087CTCGTTCACCACCTCTGCTACTTCCTTCCACTGTTGCTGCTTCAACGTCC
Brassica rapa genome, scaffold: A05.
LR031570.1:15451570-15451589
ATCTGTTTTGAGGTACTTGCATTGACGGCT15451570CTCGTTCACCACCTCTGCTACTTCCTTCCACTGTTGCTGCTTCAACGTCC
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:9560996-9561015
ATCTGTTTTGAGGTACTTGCATTGACGGCT9560996CTCGTTCACCACCTCTGCTACTTCCTTCCACTGTTGCTGCTTCAACGTCC
60ACAB48_UP_004_A02_01OCT2004_016 Brassica napus seed library Brassica napus cDNA 5', mRNA sequence.
EE422438.1:306-325
GGACGTTGAAGCAGCAACAGTGGAAGGAAG306TAGCAGAGGTGGTGAACGAGAGCCGTCAATGCAAGTACCTCAAAACAGAT
6ETGS6H_UP_006_D07_13JUN2003_029 Brassica napus 6ETGS6h Brassica napus cDNA 5', mRNA sequence.
EE439865.1:376-395
GGACGTTGAAGCAGCAACAGTGGAAGGAAG376TAGCAGAGGTGGTGAACGAGAGCCGTCAATGCAAGTACCTCAAAACAGAT
BNSCS4CT_UP_035_A11_19JAN2005_095 Brassica napus seed coat BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EE470225.1:356-375
GGACGTTGAAGCAGCAACAGTGGAAGGAAG356TAGCAGAGGTGGTGAACGAGAGCCGTCAATGCAAGTACCTCAAAACAGAT
BNSCS3CT_UP_045_E08_04MAY2007_056 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV040083.1:376-395
GGACGTTGAAGCAGCAACAGTGGAAGGAAG376TAGCAGAGGTGGTGAACGAGAGCCGTCAATGCAAGTACCTCAAAACAGAT
0082019 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV158157.1:360-379
GGACGTTGAAGCAGCAACAGTGGAAGGAAG360TAGCAGAGGTGGTGAACGAGAGCCGTCAATGCAAGTACCTCAAAACAGAT
BR044420 salt-treated whole plant cDNA library KBLS Brassica rapa subsp. pekinensis cDNA clone KBLS-063F08 5', mRNA sequence.
EX059776.1:296-315
GGACGTTGAAGCAGCAACAGTGGAAGGAAG296TAGCAGAGGTGGTGAACGAGAGCCGTCAATGCAAGTACCTCAAAACAGAT
BR078590 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-102H11 5', mRNA sequence.
EX092300.1:379-398
GGACGTTGAAGCAGCAACAGTGGAAGGAAG379TAGCAGAGGTGGTGAACGAGAGCCGTCAATGCAAGCACCTCAAAACAGAT
Hordeum bulbosum genome assembly, chromosome: 3H_3.
OY737882.1:279011241-279011260
GCCAGCTTGATGGGTTGTACAAAAAGTCAT279011241TAGCAGAGGTGGTGAACGAGGAATCACCCTCCGAGAACCACCATCAGTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCGTTCACCACCTCTGCTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCGTTCACCACCTCTGCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.111 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=CTCGTTCACCACCTCTGCTA&k=0&no_gap=0&offset=0&limit=50
0.859 | 0.748 | search_minus_done; http://172.18.8.135:50400/match?q=TAGCAGAGGTGGTGAACGAG&k=0&no_gap=0&offset=0&limit=44
0.865 | 0.006 | cgi_end;

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