GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 08:15:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sarcophilus harrisii genome assembly, chromosome: 3.
LR735556.1:241812117-241812136
GTCAGAAACCAGCATACTAGGATTGCTTTT241812117CTCTCAAGCCTTCCTCAAACTCTGCCCCTACTTCCTTAAATGTGGAGTAT
Erpetoichthys calabaricus genome assembly, chromosome: 7.
LR536438.2:140114797-140114816
GTAATGTACAGTTTGTGAATGAAAGGAACA140114797CTCTCAAGCCTTCCTCAAACTTGCCAAGATAATCAAGCTTATAGAAAAGG
Salmo trutta genome assembly, chromosome: 25.
LR584436.1:32662614-32662633
TTCCTCCCCCTCTTTTCTTTCATTGTCTTT32662614CTCTCAAGCCTTCCTCAAACCCACCCACCGCCTCCCCTCCCCAGGCCTGA
TSA: Cannabis sativa PK21770.1_1.CasaPuKu mRNA sequence.
JP449610.1:932-951
AATTAAGGAGTACCTTAAATTTCAACAAAG932CTCTCAAGCCTTCCTCAAACCAACTCTTGACTTAATAAGACTCAAATAAT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-16.
CP023128.1:20937759-20937778
TACAACTCGTGCATGCTGACATATGCGGTC20937759CTCTCAAGCCTTCCTCAAACAGCAACAAGAGGTATATCTTAAGCTTTATA
Sphenostylis stenocarpa genome assembly, chromosome: 3.
OY731400.1:64778878-64778897
AGAAAGGAACCACCATGAGCTTGATCTCAG64778878CTCTCAAGCCTTCCTCAAACTTCCTGCAAAGCCACTGTTATGAAGTTGTA
Vigna unguiculata cultivar Xiabao 2 chromosome Vu08.
CP039351.1:33328830-33328849
TATGAAGGTTAAGATATACCTTTTGTTGCT33328830GTTTGAGGAAGGCTTGAGAGGACCGCATATGTCAGCATGCACTAGTTGTA
Parietaria judaica genome assembly, chromosome: 11.
OX940870.1:1418224-1418243
TATAAAGCTCAAGATATACCTCTTGTTGCT1418224GTTTGAGGAAGGCTTGAGAGGAATAAATATGTTAGCCTGCAATTGTTGTA
Diaphorina citri isolate DC chromosome 6.
CP125329.1:4960694-4960713
AATAAAGCGCAAACTGAGATGGAGAGATAA4960694GTTTGAGGAAGGCTTGAGAGAAAAGGGGTGGAGAAGAGAGGAGGTGTTAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCTCAAGCCTTCCTCAAAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTCAAGCCTTCCTCAAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.144 | 0.135 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTCAAGCCTTCCTCAAAC&k=0&no_gap=0&offset=0&limit=50
0.175 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTGAGGAAGGCTTGAGAG&k=0&no_gap=0&offset=0&limit=44
0.177 | 0.002 | cgi_end;

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