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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 20:38:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Homo sapiens 3 BAC RP13-635I23 (Roswell Park Cancer Institute Human BAC Library) complete sequence.
AC131210.3:167690-167707
AGCCACCAATTCCTCGCAATAAATCTCTCC167690CTCTCCCACCCTTCAGATTAGGGCAGGGTGAAGACTGTAAAAAGAATG
Acomys russatus genome assembly, chromosome: 17.
LR877228.1:25770416-25770433
TCCTGACAGTCAGTCCGCAAACTGTCTCAG25770416CTCTCCCACCCTTCAGATCTGTGGACCCCAGGACAGGCCCTTCCCAGT
Acomys dimidiatus genome assembly, chromosome: 7.
OU015380.1:86741413-86741430
TCCTGCCAGTCAGTCCCCAAACTGTCTCAG86741413CTCTCCCACCCTTCAGATCTGTGGACCCCAGGACAGGCCCTTCCCAGT
Heterocephalus glaber genome assembly, chromosome: 3.
OX090911.1:1175360-1175377
TAGGAAGGAAAGAAATCCAAATTTCTAAAC1175360CTCTCCCACCCTTCAGATCCTACATTTCCATATCCTATCATCGTACAA
Sus scrofa scrofa breed NS chromosome 1.
CP071552.1:276906055-276906072
CTTGACTCCCCTTCTCTGCCTCGCCCATCT276906055CTCTCCCACCCTTCAGATCTCGAAGTCCCTTCAGACACAGCTTCCACC
Meles meles genome assembly, chromosome: 16.
OV277457.1:19579910-19579927
TCCCCCTCTGCCTGGCTAATTCTTTTCTCC19579910CTCTCCCACCCTTCAGATCTCAGTCTGAGTTCACTGCCTGATGAAGGT
Martes martes genome assembly, chromosome: 9.
OY734071.1:58798080-58798097
TCACCTTCTGCCTGGCTAATTCTTTTCTCC58798080CTCTCCCACCCTTCAGATCTCAGCCTGAGTCCACTGCCTGGTGATGGT
Sus scrofa genome assembly, chromosome: 1.
OY997208.1:287356930-287356947
CTCGACTCCCCTTCTCAGCCTCGCCCATCT287356930CTCTCCCACCCTTCAGATCTCAAAGTCCCTTCAGACACGGCTTCCACC
Pseudochaenichthys georgianus genome assembly, chromosome: 15.
LR792560.1:23859142-23859159
CCTCCACTTTGGCTGTCGCTAACTATCTTC23859142CTCTCCCACCCTTCAGATCTCCATGTGGAGGGGTTGTTCCGTGTGCCA
Thunnus albacares genome assembly, chromosome: 16.
OU607607.1:15774201-15774218
AATGCTACAATACTGTCACTAAACTGGAGA15774201CTCTCCCACCCTTCAGATCTTGCATCTTGTAAATAGTAGAAGTATCAC
Vipera ursinii genome assembly, chromosome: 2.
OX365965.1:117486551-117486568
TGGACGGGTCGCTTCTCATTTCTGATCTTT117486551CTCTCCCACCCTTCAGATTTAACTTTCTGAATTCTTTGTTCAATCCAC
Notothenia rossii genome assembly, chromosome: 6.
OX449116.1:73222390-73222407
CCTCCACTTTGGCTGTCGCTAACTATCTTC73222390CTCTCCCACCCTTCAGATCTCCATGTGGAGGGGTTGTTCCGTGTGCCA
Homo sapiens chromosome 3 clone RP11-20O3, *** SEQUENCING IN PROGRESS ***, 29 unordered pieces.
AC117400.2:160384-160401
AGCCACCAATTCCTCGCAATAAATCTCTCC160384CTCTCCCACCCTTCAGATTAGGGCAGGGTGAAGACTGTAAAAAGAATG
Coriaria nepalensis isolate Cnep1 chromosome 15.
CP114475.1:10043654-10043671
TCTTCTCCTCCTCTCTCTCTCTCTTCTCCA10043654CTCTCCCACCCTTCAGATCTCGCGCTCTGCAACTGCCAGTTTCTCTCA
Coriaria nepalensis isolate Cnep1 chromosome 15.
CP114495.1:10082230-10082247
TCTTCTCCTCCTCTCTCTCTCTCTTCTCCA10082230CTCTCCCACCCTTCAGATCTCGCGCTCTGCAACTGCCAGTTTCTCTCA
Hordeum bulbosum genome assembly, chromosome: 3H_2.
OY737401.1:43422122-43422139
CCATTACTGTTATTTTGTTGAAGCTCCTTT43422122CTCTCCCACCCTTCAGATCACCCCATCCTCCAGCACCAAGTTGTTCTT
Hordeum bulbosum genome assembly, chromosome: 3H_1.
OY737491.1:38491203-38491220
CCATTACTGTTGTTTTGCTGAAGCTCCTTT38491203CTCTCCCACCCTTCAGATCACCCCCATCCTCCAGCACCAAGTTGTTCT
Hordeum bulbosum genome assembly, chromosome: 7H_2.
OY737879.1:119912512-119912529
CGGTAATGTTATTTTTCTGAAACTCTGCTT119912512CTCTCCCACCCTTCAGATCACCCCCATCCTCGAACAACAAGTTATTCT
Patella pellucida genome assembly, chromosome: 3.
OU795038.1:85311114-85311131
AGTTAAAATCTATTCCAGCAGACCCACCGC85311114CTCTCCCACCCTTCAGATGTATCGCTTCAATAACAGTAGCATTGCCCC
Schistosoma intercalatum genome assembly, chromosome: Z.
OX103732.1:41396432-41396449
TCTCAGGGGTAAACCTGTCAGGGCCTGCTG41396432CTCTCCCACCCTTCAGATTTCCTATAGCTTTTTCAACTTTGTAAAGAG
Schistosoma intercalatum genome assembly, chromosome: Z.
OX103732.1:41525412-41525429
TCTCAGGGGTAAACCTGTCAGGGCCTGCTG41525412CTCTCCCACCCTTCAGATTTCCTATAGCTTTTTCAACTTCATAAAGAG
Schistosoma intercalatum genome assembly, chromosome: Z.
OX103732.1:42051485-42051502
TCTCAGGAGTAAACCTGTCAGGGCCTGCTG42051485CTCTCCCACCCTTCAGATTTCCTATAGCTTTTTCAACTTCATAAAGAG
Schistosoma intercalatum genome assembly, chromosome: Z.
OX103883.1:37503759-37503776
TCTCAGGGGTAAACCTGTCAGGGCCTGCTG37503759CTCTCCCACCCTTCAGATTTCCTATAGCTTTTTCAACTTCATAAAGAG
Schistosoma intercalatum genome assembly, chromosome: Z.
OX103883.1:37857909-37857926
TCTCAGGGGTAAACCTGTCAGGGCCTGCTG37857909CTCTCCCACCCTTCAGATTTCCTATAGCTTTTTCAACTTTGTAAAGAG
Schistosoma intercalatum genome assembly, chromosome: Z.
OX103883.1:37956288-37956305
TCTCAGGGGTAAACCTGTCAGGGCCTGCTG37956288CTCTCCCACCCTTCAGATTTCCTATAGCTTTTTCAACTTCATAAAGAG
Schistosoma intercalatum genome assembly, chromosome: Z.
OX103883.1:38444513-38444530
TCTCAGGAGTAAACCTGTCAGGGCCTGCTG38444513CTCTCCCACCCTTCAGATTTCCTATAGCTTTTTCAACTTCATAAAGAG
Schistosoma spindale genome assembly, chromosome: 4.
OX336417.1:18685842-18685859
TCTCTGGGGTAAACCTGTCAGGGCCTACTG18685842CTCTCCCACCCTTCAGATTTCCTATAGCTTTTTCAACTTCGTAAAGAG
Schistosoma spindale genome assembly, chromosome: 4.
OX336417.1:19024287-19024304
TCTCTGGGGTAAACCTGTCAGGGCCTACTG19024287CTCTCCCACCCTTCAGATTTCCTATAGCTTTTTCAACTTCGTAAAGAG
Nemotelus nigrinus genome assembly, chromosome: 2.
OX376373.1:156476413-156476430
CAGTGATGTAATGATACAGTGTGATATGCC156476413CTCTCCCACCCTTCAGATACAAAGCTCCCAAGCTTGAATGGTGATGGT
Anopheles arabiensis genome assembly, chromosome: 2.
OZ001348.1:65311921-65311938
AGATTTGATGGATAGTTAAGATTTAAAGCG65311921CTCTCCCACCCTTCAGATACTGCACACAAAAAGGGAGCACGAGTTTAG
Homo sapiens DNA, chromosome 3, nearly complete genome.
AP023463.1:143342197-143342214
CATTCTTTTTACAGTCTTCACCCTGCCCTA143342197ATCTGAAGGGTGGGAGAGGGAGAGATTTATTGCGAGGAATTGGTGGCT
Homo sapiens isolate CHM13 chromosome 3.
CP068275.2:146004205-146004222
CATTCTTTTTACAGTCTTCACCCTGCCCTA146004205ATCTGAAGGGTGGGAGAGGGAGAGATTTATTGCGAGGAATTGGTGGCT
Homo sapiens isolate NA24385 chromosome 3.
CP139518.1:145797821-145797838
CATTCTTTTTACAGTCTTCACCCTGCCCTA145797821ATCTGAAGGGTGGGAGAGGGAGAGATTTATTGCGAGGAATTGGTGGCT
Homo sapiens isolate NA24385 chromosome 3.
CP139541.1:146229761-146229778
CATTCTTTTTACAGTCTTCACCCTGCCCTA146229761ATCTGAAGGGTGGGAGAGGGAGAGATTTATTGCGAGGAATTGGTGGCT
Onychomys torridus genome assembly, chromosome: 4.
LR877191.1:42814541-42814558
TGTACATCCTGAGCAGCCCCGCAGCATCAT42814541ATCTGAAGGGTGGGAGAGCTGCCAAAGCCTAGTAGCCAGCCTGGGCCC
Acomys russatus genome assembly, chromosome: 24.
LR877235.1:57567816-57567833
TTCAAATATACATGTCAAGGTTAAGACACT57567816ATCTGAAGGGTGGGAGAGATGGCTCGGTGGTTGGGAGCACTGACTGCT
Heterocephalus glaber genome assembly, chromosome: 3.
OX090943.1:4461930-4461947
TTGTACGATGATAGGATATGGAAATGTAGG4461930ATCTGAAGGGTGGGAGAGGTTTAGAAATTTGGATTTCTTTCCTTCCTA
Onychomys arenicola genome assembly, chromosome: 4.
OX460350.1:43774467-43774484
TGTACATCCTGAGCAGCCCCGCAGCATCAT43774467ATCTGAAGGGTGGGAGAGCTGCCAAAGCCTAGTAGCCAGCCTGGGCCC
Onychomys leucogaster genome assembly, chromosome: 4.
OX460374.1:43116364-43116381
TGTACATCCTGAGCAGCCCCGCAGCATCAT43116364ATCTGAAGGGTGGGAGAGCTGCCAAAGCCTAGTAGCCAGCCTGGGCCC
Onychomys leucogaster genome assembly, chromosome: 4.
OX460421.1:43058892-43058909
TGTACATCCTGAGCAGCCCCGCAGCATCAT43058892ATCTGAAGGGTGGGAGAGCTGCCAAAGCCTAGTAGCCAGCCTGGTCCC
Onychomys arenicola genome assembly, chromosome: 4.
OX460445.1:43176768-43176785
TGTACATCCTGAGCAGCCCCGCAGCATCAT43176768ATCTGAAGGGTGGGAGAGCTGCCAAAGCCTAGTAGCCAGCCTGGGCCC
Onychomys torridus genome assembly, chromosome: 4.
OX460885.1:42814541-42814558
TGTACATCCTGAGCAGCCCCGCAGCATCAT42814541ATCTGAAGGGTGGGAGAGCTGCCAAAGCCTAGTAGCCAGCCTGGGCCC
Heterocephalus glaber genome assembly, chromosome: 1.
OZ001066.1:4427624-4427641
TTGTACGATGATAGGATATGGAAATGTAGG4427624ATCTGAAGGGTGGGAGAGGTTTAGAAATTTGGATTTCTTTCCTTCCTA
Heterocephalus glaber genome assembly, chromosome: 1.
OZ001109.1:4461930-4461947
TTGTACGATGATAGGATATGGAAATGTAGG4461930ATCTGAAGGGTGGGAGAGGTTTAGAAATTTGGATTTCTTTCCTTCCTA
Pig DNA sequence from clone CH242-222B5 on chromosome 1.
CU572088.13:53373-53390
GGTGGAAGCTGTGTCTGAAGGGACTTCGAG53373ATCTGAAGGGTGGGAGAGAGATGGGCGAGGCAGAGAAGGGGAGTCAAG
Lutra lutra genome assembly, chromosome: 9.
LR738411.1:82603665-82603682
ACCATCACCAGGCAGTGGAATCAGACTGAG82603665ATCTGAAGGGTGGGAGAGGGAGAAAGGAATTAGCCAGGCAGAGGGGGA
Erinaceus europaeus genome assembly, chromosome: 2.
OX485811.1:127251637-127251654
CAAGCTCCTGGTTTCAAGCCACTGATTCTC127251637ATCTGAAGGGTGGGAGAGGCCTTCATAAGTAGTGAAGAAGGTCTCTAG
Plecotus auritus genome assembly, chromosome: 8.
OY734029.1:11583012-11583029
GATAAAGGCTCCAAACCGGGAAAGAGCTAC11583012ATCTGAAGGGTGGGAGAGGAGGAAGAACCCCCAGAGGTGGAAGAAGAG
Thunnus maccoyii genome assembly, chromosome: 17.
OU343207.1:14553943-14553960
GTGATACTTCTACTATTTACAAGATGCAAG14553943ATCTGAAGGGTGGGAGAGTCTCCAGTTTAGTGACAGTATTGTAGCATT
Echiichthys vipera genome assembly, chromosome: 1.
OY829646.1:31561528-31561545
AACTTCAGTGAAACAGAAGCCTTCGCGGTT31561528ATCTGAAGGGTGGGAGAGAAAGAGAGAGAAAGGAACGTGAGAGACAAA
Thunnus thynnus genome assembly, chromosome: 18.
OZ004749.1:14737898-14737915
GTGATACTTCTACTATTTACAAGATGCAAG14737898ATCTGAAGGGTGGGAGAGTCTCCAGTTTAGTGACAGTATTGTAGCATT
Alphaproteobacteria bacterium isolate b1e32fb5-33d9-4808-b364-4179d3f700a5 genome assembly, chromosome: 2.
OY730418.1:7221-7238
TGGCACTATCCGTCGGTGGCACCAACTTCA7221ATCTGAAGGGTGGGAGAGAACGAGGCAGTTTGGAGGCAGCATTGTGTT
Eukaryotic synthetic construct chromosome 3.
CP034502.1:142915707-142915724
CATTCTTTTTACAGTCTTCACCCTGCCCTA142915707ATCTGAAGGGTGGGAGAGGGAGAGATTTATTGCGAGGAATTGGTGGCT
Eukaryotic synthetic construct chromosome 3.
CP034527.1:142915707-142915724
CATTCTTTTTACAGTCTTCACCCTGCCCTA142915707ATCTGAAGGGTGGGAGAGGGAGAGATTTATTGCGAGGAATTGGTGGCT
EG-A11_008_D11 Oil palm abnormal apex Lambda Zap Library Elaeis guineensis cDNA, mRNA sequence.
CN600203.1:276-293
GGAGGAGGAGGCGCCAGCGCCGGAGCCGGC276ATCTGAAGGGTGGGAGAGGAAGGGGAGGAGGAGGAAGAGGAAGGAGGA
Anopheles gambiae GSS SP6 end of clone 25K14 of NotreDame1 library from strain PEST of Anopheles gambiae (African malaria mosquito).
AL153128.1:595-612
CTAAACTCGTGCTCCCTTTTTGTGTGCAGC595ATCTGAAGGGTGGGAGAGCGCTTTAAATCTTAACTATCCATCAAATCT
Microcos paniculata chromosome 1b.
CP131447.1:8096760-8096777
TTTAGCTAAAATTGAAGCGTTGTTTACTCG8096760ATCTGAAGGGTGGGAGAGTGAGCTAAAAAGAGAGACAGGTCAGAAGAG
Microcos paniculata chromosome 1a.
CP131456.1:8047826-8047843
TTTAGCTAAAATTGAAGCGTTGTTTACTCG8047826ATCTGAAGGGTGGGAGAGTGAGCTAAAAAGAGAGACCGGTCAGAAGAG
Digitaria exilis genome assembly, chromosome: 3B.
LR994609.1:7908698-7908715
TTTTGTACTTTATTTCTGACTGTATATTGT7908698ATCTGAAGGGTGGGAGAGCATGTCTGTAGTTTTTTCTTAGAGGGTAAA
Aegilops speltoides subsp. speltoides genome assembly, chromosome: 7B.
OX082603.1:135386981-135386998
AGAATAACTTGCTATTGGAGGATGGAGGTG135386981ATCTGAAGGGTGGGAGAGAAGCAGACCTCTAGCAAAATAACATTACCG
Phragmites australis genome assembly, chromosome: 11.
OY282622.1:18761971-18761988
ACAGGATGTGTGACAACTTTGACCAGGTTT18761971ATCTGAAGGGTGGGAGAGAAGGGACTACCGCTTTCAAGCTCTTGAAGA
Echinicola soli strain LN3S3 chromosome, complete genome.
CP041253.1:2860762-2860779
TGTATGAGGTGCCGTTTAAGAAAACCACAT2860762ATCTGAAGGGTGGGAGAGTGAAAAATGCGCAGCAGGGACTGCAGGTGG
Limnephilus lunatus genome assembly, chromosome: 7.
OU830598.1:93694890-93694907
ATTAGATTTTAGATAACAGCTTATTCCAGA93694890ATCTGAAGGGTGGGAGAGGCTTGGAGAGCATCATCCTCATTAAAAAAA
Plutella xylostella genome assembly, chromosome: 23.
OW026563.1:3444002-3444019
TTCTCCTGAAGAAAAGGGTGAAGAGAGTGG3444002ATCTGAAGGGTGGGAGAGTGATGCTGTGCCGGACTTTCCAGAAGATTC
Anopheles coluzzii genome assembly, chromosome: 3.
OX030892.1:26384066-26384083
CAAAACTCGTGTTCCCTTTTTGTGTGCAGC26384066ATCTGAAGGGTGGGAGAGCGCTTTAAATCTTAACTATCCATCAAATCT
Ophion slaviceki genome assembly, chromosome: 12.
OX101794.1:7422123-7422140
GGGGGCAAGGTCGACGGCGCATGCGCCTCG7422123ATCTGAAGGGTGGGAGAGACAGACAGAAGATATTCTGTCCATGTCACA
Schistosoma intercalatum genome assembly, chromosome: Z.
OX103732.1:40837099-40837116
CTCTTTATGAAGTTGAAAAAGCTATAGGAA40837099ATCTGAAGGGTGGGAGAGCAGCAGGCCCTGACAGGTTTACCCCTGAGA
Schistosoma intercalatum genome assembly, chromosome: Z.
OX103732.1:41548389-41548406
CTCTTTATGAAGTTGAAAAAGCTATAGGAA41548389ATCTGAAGGGTGGGAGAGCAGCAGGCCCTGACAGGTTTACCCCTGAGA
Schistosoma bovis genome assembly, chromosome: Z.
OX103961.1:41162722-41162739
CTCTTTACGAAGTTGAAAAAGCTATAGGAA41162722ATCTGAAGGGTGGGAGAGCAGCAGGCCCTGACGGGTTTACCCCTGAGA
Allacma fusca genome assembly, chromosome: X2.
OX359250.1:27638025-27638042
ATGCTGGTGAAAGGAGGAGACTGAGTAGAT27638025ATCTGAAGGGTGGGAGAGCTGGGAAGGGAACAAAAAGGAACGATTTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCTCCCACCCTTCAGAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTCCCACCCTTCAGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.218 | 0.209 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTCCCACCCTTCAGAT&k=0&no_gap=0&offset=0&limit=50
0.418 | 0.200 | search_minus_done; http://172.18.8.135:50400/match?q=ATCTGAAGGGTGGGAGAG&k=0&no_gap=0&offset=0&limit=20
0.444 | 0.026 | cgi_end;

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