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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 20:04:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

obv09e12.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH945333.1:521-544
ATACCTTGAGCATATATATGAAATGTTTGG521CTCTCCTCTAACCTGTTCCAAGAATCAAGAATTGGTCAATAAATAATTTCCAAA
ljt33e04.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ045679.1:569-592
ATACCTTGAGCATATATATGAAATGTTTGG569CTCTCCTCTAACCTGTTCCAAGAATCAAGAATTGGTCATAAAANTTCCNNAAAA
Brassica rapa subsp. pekinensis clone KBrB041I17, complete sequence.
CU695260.1:30642-30665
ATACCTTGAGCATATATATGAAATGTTTGG30642CTCTCCTCTAACCTGTTCCAAGAATCAAGAATTGATCAATAAATAGATTCAAAT
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:54598418-54598441
ATACCTTGAGCATATATATGAAATGTTTGG54598418CTCTCCTCTAACCTGTTCCAAGAATCAAGAATTGGTCAATAAATAGATTCAAAT
Brassica rapa subsp. pekinensis clone KBrB081L17, complete sequence.
FP236815.1:56881-56904
ATTTGAATCTATTTATTGATCAATTCTTGA56881TTCTTGGAACAGGTTAGAGGAGAGCCAAACATTTCATATATATGCTCAAGGTAT
Brassica rapa DNA, clone: BrSTS-78(A9709), sequence tagged site.
AB265777.1:447-470
ATTTGAATCTATTTATTGATCAATTCTTGA447TTCTTGGAACAGGTTAGAGGAGAGCCAAACATTTCATATATATGCTCAAGGTAT
Brassica rapa DNA, clone: BrSTS-78(N-WMR-3), sequence tagged site.
AB265778.1:450-473
ATTTGAATCTATTTATTGATCAATTCTTGA450TTCTTGGAACAGGTTAGAGGAGAGCCAAACATTTCATATATATGCTCAAGGTAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB003A10, complete sequence.
AC189193.1:84209-84232
ATTTGAATCTATTTATTGATCAATTCTTGA84209TTCTTGGAACAGGTTAGAGGAGAGCCAAACATTTCATATATATGCTCAAGGTAT
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:15866552-15866575
ATTTGAATCTATTTATTGATCAATTCTTGA15866552TTCTTGGAACAGGTTAGAGGAGAGCCAAACATTTCATATATATGCTCAAGGTAT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:15746913-15746936
ATTTGAATCTATTTATTGATCAATTCTTGA15746913TTCTTGGAACAGGTTAGAGGAGAGCCAAACATTTCATATATATGCTCAAGGTAT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:24635428-24635451
ATTTGAATCTATTTATTGACCAATTCTTGA24635428TTCTTGGAACAGGTTAGAGGAGAGCCAAACATTTCATATATATGCTCAAGGTAT
Brassica rapa genome, scaffold: A03.
LR031572.1:15526981-15527004
ATTTGAATCTATTTATTGATCAATTCTTGA15526981TTCTTGGAACAGGTTAGAGGAGAGCCAAACATTTCATATATATGCTCAAGGTAT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:15653062-15653085
ATTTGAATCTATTTATTGATCAATTCTTGA15653062TTCTTGGAACAGGTTAGAGGAGAGCCAAACATTTCATATATATGCTCAAGGTAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCTCCTCTAACCTGTTCCAAGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTCCTCTAACCTGTTCCAAGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.353 | 0.344 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTCCTCTAACCTGTTCCAAGAA&k=0&no_gap=0&offset=0&limit=50
0.474 | 0.122 | search_minus_done; http://172.18.8.135:50400/match?q=TTCTTGGAACAGGTTAGAGGAGAG&k=0&no_gap=0&offset=0&limit=46
0.480 | 0.006 | cgi_end;

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