GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2026-01-07 11:32:58, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Cucumis melo isolate PI 511890 chromosome 8.
CP136107.1:4326321-4326338
GTAAATGAGTCTGACGCCTTTCTTTGATTG4326321CTCTCTACACGATGCACGTCAAGAATCTCAATTCTGAACAAAAGGACG
Cucumis melo genomic scaffold, anchoredscaffold00007.
LN681875.1:4325389-4325406
GTAAATGAGTCTGACGCCTTTCTTTGATTG4325389CTCTCTACACGATGCACGTCAAGAATCTCAATTCTGAACAAAAGGACG
Cucumis melo genomic chromosome, chr_8.
LN713262.1:4325389-4325406
GTAAATGAGTCTGACGCCTTTCTTTGATTG4325389CTCTCTACACGATGCACGTCAAGAATCTCAATTCTGAACAAAAGGACG
Fraxinus pennsylvanica genome assembly, chromosome: 1.
OU503036.1:32155996-32156013
TCTCTCTATATATCATCCATTATCCTTTCT32155996CTCTCTACACGATGCACGCTCACAAATTCACAATGGCATCGCAACTAT
Bromus sterilis genome assembly, chromosome: 3.
OX465597.1:392725100-392725117
GCCCCACCACATCATCTTCCCCGTGAGACT392725100CTCTCTACACGATGCACGAGTAACGATATTTCTCCGCCCCAGGACCCC
EST1102398 Dulce mature fruit library Cucumis melo cDNA clone FR14O1, mRNA sequence.
DV633802.1:170-187
CGTCCTTTTGTTCAGAATTGAGATTCTTGA170CGTGCATCGTGTAGAGAGCAATCAAAGAAAGGCGTCAGACTCATTTAC
EST1102893 Tam Dew mature fruit library Cucumis melo cDNA clone FR16G19, mRNA sequence.
DV634297.1:139-156
CGTCCTTTTGTTCAGAATTGAGATTCTTGA139CGTGCATCGTGTAGAGAGCAATCAAAGAAAGGCGTCAGACTTATTTAC
EST1103317 Tam Dew mature fruit library Cucumis melo cDNA clone FR17L23, mRNA sequence.
DV634721.1:181-198
CGTCCTTTTGTTCAGAATTGAGATTCTTGA181CGTGCATCGTGTAGAGAGCAATCAAAGAAAGGCGTCAGACTTATTTAC
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_9133, mRNA sequence.
JW927298.1:221-238
CGTCCTTTTGTTCAGAATTGAGATTCTTGA221CGTGCATCGTGTAGAGAGCAATCAAAGAAAGGCGTCAGACTCATTTAC
Volucella bombylans genome assembly, chromosome: 1.
OX422140.1:118470324-118470341
CATTCGCTAATTTCTTTACATATACAAGTC118470324CGTGCATCGTGTAGAGAGAAAAAAGTTGTTTCTTTCGTCTGAGACCGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCTCTACACGATGCACG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTCTACACGATGCACG | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.290 | 0.280 | search_plus_done; http://172.18.8.135:50800/match?q=CTCTCTACACGATGCACG&k=0&no_gap=0&offset=0&limit=50
0.535 | 0.244 | search_minus_done; http://172.18.8.135:50800/match?q=CGTGCATCGTGTAGAGAG&k=0&no_gap=0&offset=0&limit=45
0.538 | 0.004 | cgi_end;

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