GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 20:50:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Pyrus x bretschneideri Unigene36027_XinShao mRNA sequence.
JR628469.1:206-225
TTTTCAGCAGGTAACTTGTATTCATGTTCT206CTCTGCTGTCTACGGGCTTCAACACGCATTCTTTTTCTT
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38557205-38557224
TTTTCAGCAGGTAACTTGTATTCATGTTCT38557205CTCTGCTGTCTACGGGCTTCAACACGCATTCTTTTTCTTTCCTTCTCCTT
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:38650438-38650457
TTTTCAGCAGGTAACTTGTATTCATGTTCT38650438CTCTGCTGTCTACGGGCTTCAACACGCATTCTTTTTCTTTCCTTCTCCTT
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:25623963-25623982
TTTTCAGCAGGTAACTTGTATTCATGTTCT25623963CTCTGCTGTCTACGGGCTTCAACACGCATTCTCTTTCTTTCCTTCTCCTT
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2484179-2484198
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2484179GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2495548-2495567
AAGGAGAAGGAAGGAAAAAGAATGCGTGTT2495548GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:2496404-2496423
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2496404GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:2442282-2442301
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2442282GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:2541919-2541938
AAGGAGAAGGAAAGAAAAAGAATGCGTGTG2541919GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:2639190-2639209
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2639190GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2481641-2481660
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2481641GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:2493995-2494014
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2493995GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:2508717-2508736
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2508717GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2597004-2597023
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2597004GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:2612172-2612191
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2612172GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2590331-2590350
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2590331GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:2610810-2610829
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2610810GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2645811-2645830
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2645811GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:2660587-2660606
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2660587GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2685762-2685781
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2685762GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:2700539-2700558
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2700539GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2661023-2661042
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2661023GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2716691-2716710
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2716691GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:2730811-2730830
AAGGAGAAGGAAAGAAAAAGAATGCGTGTT2730811GAAGCCCGTAGACAGCAGAGAGAACATGAATACAAGTTACCTGCTGAAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCTGCTGTCTACGGGCTTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTGCTGTCTACGGGCTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.158 | 0.149 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTGCTGTCTACGGGCTTC&k=0&no_gap=0&offset=0&limit=50
0.398 | 0.239 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGCCCGTAGACAGCAGAG&k=0&no_gap=0&offset=0&limit=46
0.411 | 0.013 | cgi_end;

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