GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 06:16:31, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BOMNB49TF BO_2_3_KB Brassica oleracea genomic clone BOMNB49, genomic survey sequence.
BH712682.1:695-714
AATATGTATTCCAAAAAAGAAGCAACATTG695CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTAATAAATT
oed19c01.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH987150.1:634-653
AATATGTATTCCAAAAAAGAAGCAACATTG634CTCTTCATACGCAAGTCTTTATAACCAAT
BOT01-104G11TR BOT01 Brassica oleracea genomic clone BOT01-104G11, genomic survey sequence.
FI754132.1:719-738
AATATGTATTCCAAAAAAGAAGCAACATTG719CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTAATAAATT
Raphanus sativus cultivar WK10039 clone RsH022D04, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.
AC255195.1:46808-46827
TATTTAATTCCAATAAAGAAGAAAAATTTG46808CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAACTAATTAATAAATT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:13780193-13780212
ATATTTATTCCAAAAAAGAAGCAACATTTG13780193CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTGATAAATT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:26521444-26521463
AATATGTATTCCAAAAAAGAAGCAACATTG26521444CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTAATAAATT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:26542477-26542496
TATGTAAAAAAAAAAAAAGAAGCAACATTG26542477CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTAATAAATT
Brassica rapa genome, scaffold: A07.
LR031574.1:12829582-12829601
ATATTTATTCCAAAAAAGAAGCAACATTTG12829582CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTGATAAATT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:29545948-29545967
AATATGTATTCCAAAAAAGAAGCAACATTG29545948CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTAATAAATT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:13121090-13121109
ATATTTATTCCAAAAAAGAAGCAACATTTG13121090CTCTTCATACGCAAGTCTTTATAACCAATAGTCCAAATAATTGATAAATT
Tinea semifulvella genome assembly, chromosome: 19.
OU342603.1:7307940-7307959
GACCCGCTACCATTTTATTGAAAGGCGCCA7307940CTCTTCATACGCAAGTCTTTAATTAGAATAGCCCCTCAAGGAACATAAAA
BOGJK36TR BOGJ Brassica oleracea genomic clone BOGJK36, genomic survey sequence.
BH567903.1:638-657
AATTTATTAATTATTTGGACTATTGGTTAT638AAAGACTTGCGTATGAAGAGCAATGTTGCTTCTTTTTTGGAATACATATT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:15944765-15944784
AATTTATCAATTATTTGGACTATTGGTTAT15944765AAAGACTTGCGTATGAAGAGCAAATGTTGCTTCTTTTTTGGAATAAATAT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:29339407-29339426
AATTTATTAATTATTTGGACTATTGGTTAT29339407AAAGACTTGCGTATGAAGAGCAATGTTGCTTCTTTTTTGGAATACATATT
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:29360953-29360972
AATTTATTAATTATTTGGACTATTGGTTAT29360953AAAGACTTGCGTATGAAGAGCAATGTTGCTTCTTTTTTGGAATACATATT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:39536340-39536359
AATTTATGAATTAGTTGGACTGTTGGTTAT39536340AAAGACTTGCGTATGAAGAGCAAATTTTTCTTCTTTATTGGAATTAAATA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:39536340-39536359
AATTTATGAATTAGTTGGACTGTTGGTTAT39536340AAAGACTTGCGTATGAAGAGCAAATTTTTCTTCTTTATTGGAATTAAATA
Cyaniris semiargus genome assembly, chromosome: 12.
LR994558.1:14278646-14278665
ACAGGTGATAATGAAACCGGTAAATGCGAA14278646AAAGACTTGCGTATGAAGAGTTTCGTAGTTCTTATATTATTATTTATACA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCTTCATACGCAAGTCTTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTTCATACGCAAGTCTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.192 | 0.184 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTTCATACGCAAGTCTTT&k=0&no_gap=0&offset=0&limit=50
0.244 | 0.051 | search_minus_done; http://172.18.8.135:50400/match?q=AAAGACTTGCGTATGAAGAG&k=0&no_gap=0&offset=0&limit=39
0.248 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).