GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 19:07:10, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

EX2PLCL3_UP_015_E02_17APR2003_004 Brassica napus EX2PLCL3 Brassica napus cDNA 5', mRNA sequence.
EE503331.1:191-210
CAGCACCAATATAGGCATGAAGGTATTCAA191CTCTTCCCACGTCGTTGAGTGATGAAGAGTGGTTGCTTGATCCATTTTCA
0104261 Brassica napus Cold acclimation - light Brassica napus cDNA, mRNA sequence.
EV203108.1:411-430
CAGCACCAATATAGGCATGAAGGTATTCAA411CTCTTCCCACGTCGTTGAGTGATGAAGAGTGGTTGCTTGATCCATTTTCA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_979.
FX701529.1:496-515
CAGCACCAATATAGGCATGAAGGTATTCAA496CTCTTCCCACGTCGTTGAGTGATGAAGAGTGGTTGCTTGATCCATTTTCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_3798.
FX730216.1:497-516
CAGCACCAATATAGGCATGAAGGTATTCAA497CTCTTCCCACGTCGTTGAGTGATGAAGAGTGGTTGCTTGATCCATTTTCA
Brassica napus cultivar Xiang5A chromosome 7.
CP151902.1:15306652-15306671
CAGCACCAATATAGGCATGAAGGTATTCAA15306652CTCTTCCCACGTCGTTGAGTGATGAAGAGTGGTTGCTTGATCCTGTTTTT
Brassica napus cultivar Xiang5A chromosome 17.
CP151912.1:20928293-20928312
CAGCACCAATATAGGCATGAAGGTATTCAA20928293CTCTTCCCACGTCGTTGAGTGATGAAGAGTGGTTGCTTGATTGACCTGTT
Brassica napus genome assembly, chromosome: A07.
HG994361.1:8455195-8455214
CAGCACCAATATAGGCATGAAGGTATTCAA8455195CTCTTCCCACGTCGTTGAGTGATGAAGAGTGGTTGCTTGATCCTGTTTTT
Brassica napus genome assembly, chromosome: C07.
HG994371.1:15185217-15185236
CAGCACCAATATAGGCATGAAGGTATTCAA15185217CTCTTCCCACGTCGTTGAGTGATGAAGAGTGGTTGCTTGATTGACCTGTT
Brassica rapa genome, scaffold: A07.
LR031574.1:7526050-7526069
CAGCACCAATATAGGCATGAAGGTATTCAA7526050CTCTTCCCACGTCGTTGAGTGATGAAGAGTGGTTGCTTGATCCTGTTTTT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:17907294-17907313
CAGCACCAATATAGGCATGAAGGTATTCAA17907294CTCTTCCCACGTCGTTGAGTGATGAAGAGTGGTTGCTTGATTGACCTGTT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:7827758-7827777
CAGCACCAATATAGGCATGAAGGTATTCAA7827758CTCTTCCCACGTCGTTGAGTGATGAAGAGTGGTTGCTTGATCCTGTTTTT
Brassica oleracea var. viridis mRNA, clone: KALE-006F07, 3' end sequence.
DK517609.1:336-355
AAATGGTCAATCAAGCAACCACTCTTCATC336ACTCAACGACGTGGGAAGAGTTGAATACCTTCATGCCTATATTGGTGCTG
Brassica oleracea var. viridis mRNA, clone: KALE-027O15, 3' end sequence.
DK525836.1:366-385
AAATGGTCAATCAAGCAACCACTCTTCATC366ACTCAACGACGTGGGAAGAGTTGAATACCTTCATGCCTATATTGGTGCTG
BNSCS3CT_UP_250_G10_17MAY2007_068 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV056741.1:339-358
AAATGGTCAATCAAGCAACCACTCTTCATC339ACTCAACGACGTGGGAAGAGTTGAATACCTTCATGCCTATATTGGTGCTG
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:21123203-21123222
AAAAACAGGATCAAGCAACCACTCTTCATC21123203ACTCAACGACGTGGGAAGAGTTGAATACCTTCATGCCTATATTGGTGCTG
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:40878769-40878788
AACAGGTCAATCAAGCAACCACTCTTCATC40878769ACTCAACGACGTGGGAAGAGTTGAATACCTTCATGCCTATATTGGTGCTG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCTTCCCACGTCGTTGAGT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTTCCCACGTCGTTGAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.291 | 0.283 | search_plus_done; http://172.18.8.135:50800/match?q=CTCTTCCCACGTCGTTGAGT&k=0&no_gap=0&offset=0&limit=50
0.486 | 0.195 | search_minus_done; http://172.18.8.135:50800/match?q=ACTCAACGACGTGGGAAGAG&k=0&no_gap=0&offset=0&limit=39
0.490 | 0.004 | cgi_end;

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