GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 06:07:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:41704122-41704142
CTCATCATGTCAAATAGAACTCCTGTGTGT41704122CTCTTGAGCAGGCTTAGTTGGTAATTGTACTTGTTTTATCATAAGTAACAA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:29419663-29419683
CTCATCATGTCAAATAGAACTCCTGTGTGT29419663CTCTTGAGCAGGCTTAGTTGGTAATTGTACTTGTTTTATCATAAGTAACAA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:31173616-31173636
CTCATCATGTCAAATAGAACTCCTGTGTGT31173616CTCTTGAGCAGGCTTAGTTGGTAATTGTACTTGTTTTATCATAAGTAACAA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:29338027-29338047
CTCATCATGTCCAATAGAACTCCTGTGTGT29338027CTCTTGAGCAGGCTTAGTTGGTAATTGTACTTGTTTTATCATAAGTAACAA
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:2568953-2568973
TTGTTACTTATGATAAAACAAGTACAATTA2568953CCAACTAAGCCTGCTCAAGAGACACACAGGAGTTCTATTTGACATGATGAG
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:2856354-2856374
TTGTTACTTATGATAAAACAAGTACAATTA2856354CCAACTAAGCCTGCTCAAGAGACACACAGGAGTTCTATTGGACATGATGAG
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:2215602-2215622
TGTTACTTCATGATAAAACAAGTACAATTA2215602CCAACTAAGCCTGCTCAAGAGACACACAGGAGTTCTATTGGACATGATGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCTTGAGCAGGCTTAGTTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTTGAGCAGGCTTAGTTGG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.334 | 0.326 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTTGAGCAGGCTTAGTTGG&k=0&no_gap=0&offset=0&limit=50
0.430 | 0.096 | search_minus_done; http://172.18.8.135:50400/match?q=CCAACTAAGCCTGCTCAAGAG&k=0&no_gap=0&offset=0&limit=46
0.432 | 0.002 | cgi_end;

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