GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 19:30:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CV01024A2B08.f1 CV01-normalized library Manihot esculenta cDNA clone CV01024A2B08.f1, mRNA sequence.
DV448286.1:297-319
GAGAGCAATGTTTCTGTTAAAGAGGAAATA297CTCTTGGCTGAATCCGACGACAAAGCGAGTGAAGAGCCAGCTCTTCTCGCATC
CV02027A1A01.f1 CV02-normalized library Manihot esculenta cDNA clone CV02027A1A01.f1, mRNA sequence.
DV458340.1:416-438
GAGAGCAATGTTTCTGTTAAAGAGGAAATA416CTCTTGGCTGAATCCGACGACAAAGCGAGTGAAGAGCCAGCTCTTCTCGCATC
CASRF46TF CASR Manihot esculenta cDNA 5', mRNA sequence.
FF535611.1:150-172
GAGAGCAATGTTTCTGTTAAAGAGGAAATA150CTCTTGGCTGAATCCGACGACAAAGCGAGTGAAGAGCCAGCTCTTCTCGCATC
K022B08 Cassava root 210-day-old plants cDNA library Manihot esculenta cDNA, mRNA sequence.
FG805357.1:177-199
GAGAGCAATGTTTCTGTTAAAGAGGAAATA177CTCTTGGCTGAATCCGACGACAAAGCGAGTGAAGAGCCAGCTCTTCTCGCATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCTTGGCTGAATCCGACGACAA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTTGGCTGAATCCGACGACAA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.413 | 0.405 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTTGGCTGAATCCGACGACAA&k=0&no_gap=0&offset=0&limit=50
0.477 | 0.064 | search_minus_done; http://172.18.8.135:50400/match?q=TTGTCGTCGGATTCAGCCAAGAG&k=0&no_gap=0&offset=0&limit=46
0.477 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).