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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-03 15:49:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RTDR1_4_F04.g1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone RTDR1_4_F04_A015 5', mRNA sequence.
CF385553.1:568-587
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG568CTCTTGTTGTGGAAGTAAAGGACTGCTTGTCTATGGAGGGAATTCTCCTT
RTDR1_5_D01.g1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone RTDR1_5_D01_A015 5', mRNA sequence.
CF385728.1:672-691
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG672CTCTTGTTGTGGAAGTAAAGGACTGCTTGTCTATGGAGGGAATTCT
RTWW2_3_H09.b2_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_3_H09_A021 3', mRNA sequence.
CF473480.1:262-281
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG262CTCTTGTTGTGGAAGTAAAGGACTGCTTGTCTATGGAGGGAATTCTCCTT
RTWW2_3_H09.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_3_H09_A021 5', mRNA sequence.
CF473555.1:212-231
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG212CTCTTGTTGTGGAAGTAAAGGACTGCTTGTCTATGGAGGGAATTCTCCTT
FLD1_6_B10.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_6_B10_A029 3', mRNA sequence.
CO158299.1:380-399
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG380CTCTTGTTGTGGAAGTAAAGGACTGCTCGTCTATGGAGGGAATTCTCCTT
FLD1_6_B10.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_6_B10_A029 5', mRNA sequence.
CO158376.1:687-706
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG687CTCTTGTTGTGGAAGTAAAGGACTGCTCGTCTATGGAGGGAATTCTCCTT
FLD1_14_C05.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_14_C05_A029 3', mRNA sequence.
CO159514.1:92-111
GCCCCGCGGATGGTCTGCGTTTTCTGTAGG92CTCTTGTTGTGGAAGTAAAGGACTGCTCGTGTATGGAGGGAATTCTCCTT
EST839956 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIAKR65 5' end, mRNA sequence.
CO409571.1:722-741
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG722CTCTTGTTGTGGAAGTAAAGGACTGCTTGTCTATGGAGGGAATTCTCCTT
EST842701 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIALV64 5' end, mRNA sequence.
CO412316.1:518-537
GCCCCGCGGATGGTCTGCGTTTTCTGTAGG518CTCTTGTTGTGGAAGTAAAGGACTGCTCGTCTATGGAGGGAATTCTCCTT
EST842825 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIALX37 5' end, mRNA sequence.
CO412440.1:518-537
GCCCCGCGGATGGTCTGCGTTTTCTGTAGG518CTCTTGTTGTGGAAGTAAAGGACTGCTCGTCTATGGAGGGAATTCTCCTT
EST842958 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIALZ09 5' end, mRNA sequence.
CO412573.1:722-741
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG722CTCTTGTTGTGGAAGTAAAGGACTGCTTGTCTATGGAGGGAATTCTCCTT
EST857709 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPIDX10 5' end, mRNA sequence.
CV146500.1:636-655
GCCCCGCGGATGGTCTGCGTTTTCTGTAGG636CTCTTGTTGTGGAAGTAAAGGACTGCTCGTCTATGGAGGGAATTCTCCTT
EST943325 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPIBT93 5' end, mRNA sequence.
DN447526.1:520-539
GCCCCGCGGATGGTCTGCGTTTTCTGTACG520CTCTTGTTGTGGAAGTAAAGGACTGCTCGTCTATGGAGGGAATTCTCCTT
EST955366 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPIHO60 5' end, mRNA sequence.
DN459567.1:531-550
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG531CTCTTGTTGTGGAAGTAAAGGACTGCTCGTCTATGGAGGGAATTCTCCTT
EST958269 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPIIM75 5' end, mRNA sequence.
DN462470.1:569-588
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG569CTCTTGTTGTGGAAGTAAAGGACTGCTCGTCTATGGAGGGAATTCTCCTT
EST958377 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPIIO11 5' end, mRNA sequence.
DN462578.1:751-770
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG751CTCTTGTTGTGGAAGTAAAGGACTGCTTGTCTATGGAGGGAATTCTCCTT
STRS1_42_A11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_42_A11_A034 5', mRNA sequence.
DR021117.1:619-638
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG619CTCTTGTTGTGGAAGTAAAGGACTGCTTGTCTATGGAGGAAATTCTCCTT
RTBOR1_2_E07.b1_A029 Roots plus added boron Pinus taeda cDNA clone RTBOR1_2_E07_A029 3', mRNA sequence.
DR047604.1:159-178
CCCCCGCGGATGGTCTGCGTTTTCTGTAGG159CTCTTGTTGTGGAAGTAAAGGACTGCTTGTCTATGGAGGGAATTCTCCTT
RTMG1_9_C08.b1_A029 Roots minus magnesium Pinus taeda cDNA clone RTMG1_9_C08_A029 3', mRNA sequence.
DR117774.1:270-289
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG270CTCTTGTTGTGGAAGTAAAGGACTGCTTGTCTATGGAGGGAATTCTCCTT
RTMNUT1_9_C02.b1_A029 Roots minus micronutrients Pinus taeda cDNA clone RTMNUT1_9_C02_A029 3', mRNA sequence.
DR178062.1:252-271
GCCCCGCGGATGGTCTGCGTTTTCTGTAGG252CTCTTGTTGTGGAAGTAAAGGACTGTTCGTCTATGGAGGGAATTCTCCTT
EST1159396 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone PIMAM13 5' end, mRNA sequence.
DT625121.1:636-655
GCCCCGCGGATGGTCTGCGTTTTCTGTAGG636CTCTTGTTGTGGAAGTAAAGGACTGCTCGTCTATGGAGGGAATTCTCCTT
PCO0210.CR.1_G15 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO0210_G15 3', mRNA sequence.
GT264680.1:574-593
ACCCCGCGGATGGTCTGCGTTTTCTGTAGG574CTCTTGTTGTGGAAGTAAAGGACTGCTCGTCTATGGAGGGAATTCTCCTT
Hordeum bulbosum genome assembly, chromosome: 6H_4.
OY737666.1:390564396-390564415
ATGAGTTTTCCGTTCTGGATCTTATTGGTA390564396CTCTTGTTGTGGAAGTAAAGGCAAGAGAAAAATACATATGTACTCGAAGT
RTDR1_16_B06.g1_A015 Loblolly pine roots recovering from drought DR1 Pinus taeda cDNA clone RTDR1_16_B06_A015 5', mRNA sequence.
CF386767.1:255-274
AAGGAGAATTCCCTCCATAGACAAGCAGTC255CTTTACTTCCACAACAAGAGCCTACAGAAAACGCAGACCATCCGCGGGGT
FLD1_65_G04.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_65_G04_A029 5', mRNA sequence.
CO166967.1:133-152
AAGGAGAATTCCCTCCATAGACGAGCAGTC133CTTTACTTCCACAACAAGAGCCTACAGAAAACGCAGACCATCCGCGGGGT
STRS1_34_B05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_34_B05_A034 5', mRNA sequence.
DR020079.1:187-206
AAGGAGAATTCCCTCCATAGACAAGCAGTC187CTTTACTTCCACAACAAGAGCCTACAGAAAACGCAGACCATCCGCGGGGT
RTFEPL1_3_G07.g1_A029 Roots plus added iron Pinus taeda cDNA clone RTFEPL1_3_G07_A029 5', mRNA sequence.
DR078387.1:220-239
AAGGAGAATTCCCTCCATAGACGAGCAGTC220CTTTACTTCCACAACAAGAGCCTACAGAAAACGCAGACCATCCGCGGGGC
RTPHOS1_30_H03.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone RTPHOS1_30_H03_A029 5', mRNA sequence.
DR169222.1:238-257
AAGGAGAATTCCCTCCATAGACAAGCAGTC238CTTTACTTCCACAACAAGAGCCTACAGAAAACGCAGACCATCCGCGGGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCTTGTTGTGGAAGTAAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTTGTTGTGGAAGTAAAG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.193 | 1.184 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTTGTTGTGGAAGTAAAG&k=0&no_gap=0&offset=0&limit=50
1.482 | 0.289 | search_minus_done; http://172.18.8.135:50400/match?q=CTTTACTTCCACAACAAGAG&k=0&no_gap=0&offset=0&limit=27
1.486 | 0.004 | cgi_end;

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