GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 12:10:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sarcophilus harrisii genome assembly, chromosome: 1.
LR735554.1:153133405-153133424
CTGCTGCTGCTGCAGCAGCTGCTCCTGATC153133405CTCTTGTTTCTCCTCCTACTGAGCATGCCTGCCTCATTAAGCCCCTTCTA
Rhinatrema bivittatum genome assembly, chromosome: 5.
LR584391.1:121026289-121026308
TTGTGCATAGAGGAGTTTCATCTTGGGGCC121026289CTCTTGTTTCTCCTCCTACTGCACTCTACTCCACTCGCTCCAGCTTCAGC
Cyclopterus lumpus genome assembly, chromosome: 10.
OY735157.1:2424339-2424358
TTCCTCCTTCCCCTCCTCCTGCTCCTCCTC2424339CTCTTGTTTCTCCTCCTACTCCTTCTCCTCCTCCACCACCACCTCCTCCT
Pm_1572 Fruits and flowers of Prunus mume cv. Xiyeqing Prunus mume cDNA, mRNA sequence.
GW870146.1:162-181
AACGCCAAAAAACGCCTTCCTCCCTCTGCC162CTCTTGTTTCTCCTCCTACTTTACTCTATCTCTTTCTATCTGTCTAAAAG
Pm_2524 Fruits and flowers of Prunus mume cv. Xiyeqing Prunus mume cDNA, mRNA sequence.
GW871098.1:84-103
AACGCCAAAAAACGCCTTCCTCCCTCTGCC84CTCTTGTTTCTCCTCCTACTTTACTCTATCTCTTTCTATCTGTCTAAAAG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX460052.1:519595852-519595871
GCGCTCTTGATGTGAGTGATGATGAGGCCC519595852CTCTTGTTTCTCCTCCTACTGACTTTGGCTTCCCATCTGGTCCTGAGTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX590753.1:525380642-525380661
GCGCTCTTGATGTGAGTGATGATGAGGCCC525380642CTCTTGTTTCTCCTCCTACTGACTTTGGCTTCCCATCTGGTCCTGAGTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638768.1:521917751-521917770
GCGCTCTTGATGTGAGTGATGATGAGGCCC521917751CTCTTGTTTCTCCTCCTACTGACTTTGGCTTCCCATCTGGTCCTGAGTGG
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 6H.
OX638775.1:521311637-521311656
GCGCTCTTGATGTGAGTGATGATGAGGCCC521311637CTCTTGTTTCTCCTCCTACTGACTTTGGCTTCCCATCTGGTCCTGAGTGG
Inga oerstediana genome assembly, chromosome: 7.
OY723405.1:13327162-13327181
ATAAAGCTCTCCTTGATAACAACACATGGA13327162CTCTTGTTTCTCCTCCTACTAATCGCCCTATCATTGGTTGTAAATGGGTG
Inga oerstediana genome assembly, chromosome: 9.
OY723407.1:44186009-44186028
ATAAAGCTCTCCTTGATAACAACACATGGC44186009CTCTTGTTTCTCCTCCTACTAATACTAATCGCCCTGTCATTGGTTGTAAA
Inga leiocalycina genome assembly, chromosome: 2.
OY725321.1:51661023-51661042
ATAAAGCTCTCCTTGATAACAACACATGGA51661023CTCTTGTTTCTCCTCCTACTAATCGCCCTATCATTGGTTGTAAATGGGTG
Inga leiocalycina genome assembly, chromosome: 3.
OY725322.1:16802023-16802042
ATAAAGCTCTCCTTGATAACAACACATGGA16802023CTCTTGTTTCTCCTCCTACTAATCGCCCTATCATTGGTTGTAAATGGGTG
Inga leiocalycina genome assembly, chromosome: 5.
OY725324.1:11463667-11463686
ATAAAGCTCTCCTTGATAACAACACATGGA11463667CTCTTGTTTCTCCTCCTACTAATCGCCCTATCATTGGTTGTAAATGGGTG
Ypsolopha scabrella genome assembly, chromosome: 30.
OU342990.1:998122-998141
GACCTATTTATTATGTTTAAAATTAAGATC998122CTCTTGTTTCTCCTCCTACTTAAAACTTTCTCAAATTTTGCAACTGCACT
Conomelus anceps genome assembly, chromosome: 5.
OX418220.1:45915284-45915303
AAACTTCACCTCTTTTTTCTTTTCTTTCTT45915284CTCTTGTTTCTCCTCCTACTTCTCCCCCACACTTTCCCCTACTCTTCTTT
Lumbricus terrestris genome assembly, chromosome: 3.
OX457038.1:70697204-70697223
GGGTTCCTCCTATTCTCCTGCCCCTCATTC70697204CTCTTGTTTCTCCTCCTACTCTTCCTCCGAGCGTGCTGCGCATTACAAAG
Aporrectodea icterica genome assembly, chromosome: 6.
OY744607.1:135630-135649
CTTCCTCCTGCTCTATCTCCTTTTCCTCTT135630CTCTTGTTTCTCCTCCTACTCATTCACTTCCTCCTGCGATTCCTCTTACT
Aporrectodea icterica genome assembly, chromosome: 10.
OY744611.1:46937560-46937579
CCTTCTCTTCCTCCTCCTACTCCTATTCCT46937560CTCTTGTTTCTCCTCCTACTCCTCTTGCTGCTCCTCCTGCTGCTCCTACT
Prunus mume strain dayezhugan clone P01 SSR marker genomic sequence.
GU458002.1:230-249
CTTTTAGACAGATAGAAAGAGATAGAGTAA230AGTAGGAGGAGAAACAAGAG
Prunus mume strain hongmei clone P02 SSR marker genomic sequence.
GU458003.1:232-251
CTTTTAGACAGATAGAAAGAGATAGAGTAA232AGTAGGAGGAGAAACAAGAG
Inga leiocalycina genome assembly, chromosome: 2.
OY725321.1:53127221-53127240
CACCCATTTACAACTAATGATAGGGCGATT53127221AGTAGGAGGAGAAACAAGAGTCCATGTGTTGTTATCAAGGAGAGCTTTAT
Inga leiocalycina genome assembly, chromosome: 2.
OY725321.1:82774682-82774701
TCTCAAGTTAAAGAGCACATCATACTTGGC82774682AGTAGGAGGAGAAACAAGAGTATGAGAAGAAGAAGGAGAAACTATTTGAG
Inga leiocalycina genome assembly, chromosome: 3.
OY725322.1:6542568-6542587
CACCCATTTACAACCAATGATAGGGCGATT6542568AGTAGGAGGAGAAACAAGAGTCCATGTGTTGTTATCAAGGAGAGCTTTAT
Conomelus anceps genome assembly, chromosome: 1.
OX418216.1:14197591-14197610
AAAAGAAGATAAGGAAAGAGAAGATGGAGG14197591AGTAGGAGGAGAAACAAGAGAAGGAAGATGAGGAGGTGGTGTAGGAAGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTCTTGTTTCTCCTCCTACT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCTTGTTTCTCCTCCTACT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.330 | 0.321 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTTGTTTCTCCTCCTACT&k=0&no_gap=0&offset=0&limit=50
0.378 | 0.048 | search_minus_done; http://172.18.8.135:50400/match?q=AGTAGGAGGAGAAACAAGAG&k=0&no_gap=0&offset=0&limit=31
0.382 | 0.004 | cgi_end;

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