GGGenome | Results

Database:
mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 07:22:07, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Bellardia pandia genome assembly, chromosome: 1.
OU696529.1:113489685-113489704

AAAAGACTCTTTTCTGACATAATCTAAGAG113489685CTCTTTCTGACGGCACCATTTTCGAATGTAATGACCCTCTTTTCTGAAGG

EST678476 normalized cDNA library of onion Allium cepa cDNA clone ACAFR51, mRNA sequence.
CF442131.1:202-221

ACGCAGTCCAGCTCCTGGGACGACGCCGTA202AATGGTGCCGTCAGAAAGAGGACGGAAGCGTTGCACCCGGACGACAGGAC

TSA: Allium fistulosum mRNA, contig: AFU_27458.
FX581183.1:263-282

ACGCAGTCCAGCTCCTGGGACGACGCCGTA263AATGGTGCCGTCAGAAAGAGGACGGAAGCGCTACACCCGGACGACAGGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.107 | 0.098 | search_plus_done; http://172.18.8.135:50400/match?q=CTCTTTCTGACGGCACCATT&k=0&no_gap=0&offset=0&limit=50
0.162 | 0.055 | search_minus_done; http://172.18.8.135:50400/match?q=AATGGTGCCGTCAGAAAGAG&k=0&no_gap=0&offset=0&limit=49
0.163 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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