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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 08:14:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BN20.043P23F011128 BN20 Brassica napus cDNA clone BN20043P23, mRNA sequence.
CD818013.1:469-488
GAGCAAGACTTATGTGATTCAGACCAGCCG469CTGAAACGAAGAAAGCGGCATAGAAGAAAGCAAGTAAAGAACCAAGAACC
TSA: Chorispora bungeana CK_14688 mRNA sequence.
KA002755.1:337-356
AATCCTGGTCCAGCCAAAACAGACCAGATG337CTGAAACGAAGAAAGCGGCATAAAAGAAAACAAGTAGAAAACCAAGAACC
TSA: Chorispora bungeana T_29642 mRNA sequence.
KA066472.1:373-392
AATCCTGGTCCAGCCAAAACAGACCAGATG373CTGAAACGAAGAAAGCGGCATAAAAGAAAACAAGTAGAAAACCAAGAACC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:43937555-43937574
TTATTTTATCTCCCATTTACAGACCAGCCG43937555CTGAAACGAAGAAAGCGGCATAGAAGAAAGCAAGTAAAGAACCAAGAACC
Lepidium didymum genome assembly, chromosome: 8.
OY986980.1:14681530-14681549
TATCTATATCTTCCATTGACAGACCAGCCT14681530CTGAAACGAAGAAAGCGGCATAGAAGAAAACAAGTGCATAACCAAGAACC
Cardamine chenopodiifolia genome assembly, chromosome: 23.
OZ000481.1:12081271-12081290
ATTTTTGGTCTCCCATTTATAGACCAGCCG12081271CTGAAACGAAGAAAGCGGCATAGAAGAAAGCAAATACAAAACCAAGAACC
oeh51f01.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ009048.1:97-116
GGTTCTTGGTTCTTTACTTGCTTTCTTCTA97TGCCGCTTTCTTCGTTTCAGCGGCTGGTCTGTAAATGGGAGATAAAATAA
Camelina hispida cultivar hispida voucher DAO 902780 chromosome 5.
CP094635.1:28038272-28038291
GGTTCTTGGTTATGTACTTGTTTTCTTTTA28038272TGCCGCTTTCTTCGTTTCAGCGGCTGGTCTGTAAATAGGAGATGAATAAT
Camelina sativa cultivar CO46 chromosome 10.
CP131540.1:15915290-15915309
GGTTCTTGGTTATGTACTTGTTTTCTTTTA15915290TGCCGCTTTCTTCGTTTCAGCGGCTGGTCTGTAAATAGGAGATGAATAAC
Camelina sativa cultivar CO46 chromosome 11.
CP131541.1:19408543-19408562
GGTTCTTGGTTATGTACTTGTTTTCTTTTA19408543TGCCGCTTTCTTCGTTTCAGCGGCTGGTCTGTAAATTGGAGATGAATAAT
Camelina sativa cultivar CO46 chromosome 12.
CP131542.1:21936181-21936200
GGTTCTTGGTTATGTACTTGTTTTCTTTTA21936181TGCCGCTTTCTTCGTTTCAGCGGCTGGTCTGTAAATAGGAGATGAATCAT
Capsella bursa-pastoris isolate WGS_leaf chromosome 7.
CP144189.1:10949955-10949974
GGTTCTTGGTTATGTACATGCTTTCTTCTA10949955TGCCGCTTTCTTCGTTTCAGCGGCTGGTCTGTCAACGGGAAATAATTAGT
Capsella bursa-pastoris isolate WGS_leaf chromosome 15.
CP144197.1:10847298-10847317
GGTTCTTGGTTATGTACATGCTTTCTTCTA10847298TGCCGCTTTCTTCGTTTCAGCGGCTGGTCTGTCAATGGGAAATAATTGGT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:10299565-10299584
GGTTCTTGGTTCTTTACTTGCTTTCTTCTA10299565TGCCGCTTTCTTCGTTTCAGCGGCTGGTCTGTAAATGGGAGATAAAATAA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:10448456-10448475
GGTTCTTGGTTCTTTACTTGCTTTCTTCTA10448456TGCCGCTTTCTTCGTTTCAGCGGCTGGTCTGTAAATGGGAGATAAAATAA
Cardamine flexuosa genome assembly, chromosome: 2.
OY743215.1:15815378-15815397
GGTTCTTGGTTTTGTATATGCTTTCTTCTA15815378TGCCGCTTTCTTCGTTTCAGCGGCTGGTCTATAAATGTGAGATCAAAAGT
Nasturtium officinale genome assembly, chromosome: 5.
OY978503.1:9202994-9203013
GGTTCTTGGTTTTGTATTTGCTTTCTTCTA9202994TGCCGCTTTCTTCGTTTCAGCGGCTGGTCTATAAATGGGAGATCAAAATA
Cardamine chenopodiifolia genome assembly, chromosome: 7.
OZ000465.1:13085544-13085563
GGTTCTTGGTTTCGTACTTGCTTTCTTCTA13085544TGCCGCTTTCTTCGTTTCAGCGGCTGGTCTGTAAATAGAAGATAAAGAAT
Selenomonas sp. TAMA-11512 DNA, complete genome.
AP029018.1:2254476-2254495
CTCGGCAAGATTCTTCACAAATACCTTCCA2254476TGCCGCTTTCTTCGTTTCAGGATTATTCAGAACGGCTTCGGGGACCGCGC
Eudasyphora cyanicolor genome assembly, chromosome: 1.
OZ005734.1:59070470-59070489
CGTTGCTACTGACTGCAGGGTTGCCCTGTA59070470TGCCGCTTTCTTCGTTTCAGTAGCATTACGACACTCATGGCCGTACCATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTGAAACGAAGAAAGCGGCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGAAACGAAGAAAGCGGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.385 | 0.376 | search_plus_done; http://172.18.8.135:50400/match?q=CTGAAACGAAGAAAGCGGCA&k=0&no_gap=0&offset=0&limit=50
0.501 | 0.116 | search_minus_done; http://172.18.8.135:50400/match?q=TGCCGCTTTCTTCGTTTCAG&k=0&no_gap=0&offset=0&limit=44
0.510 | 0.009 | cgi_end;

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