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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:08:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Pyrus x bretschneideri Unigene9632_XinShao mRNA sequence.
JR604747.1:665-688
ACGTCTTCACACCCCCCCTGCAAATACAAG665CTGAAAGCGATCTAGATGGATGAAAAATCTAGAGAGAGAAGAAGGCGAATC
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:1651206-1651229
AAAAAAAAAAAAAAACTCAAGAATTCGTAC1651206CTGAAAGCGATCTAGATGGATGAAAAATCTAGAGAGAGAAGAAGGCGAATCTTA
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:1775291-1775314
CAAAAAAAAAAAAAACTCAAGAATTCGTAC1775291CTGAAAGCGATCTAGATGGATGAAAAATCTAGAGAGAGAAGGCGAATCTTAGAG
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141986.1:32240704-32240727
CAAAAAAAAAAAAAACTCAAGAATTCGTAC32240704CTGAAAGCGATCTAGATGGATGAAAAATCTAGAGAGAGAAGAAGGCGAATCTTA
Malus x robusta genome assembly, chromosome: 11.
OY720335.1:1625562-1625585
ATTCAAAAAAAAAAACTCGAGAATTCGTAC1625562CTGAAAGCGATCTAGATGGATGAAAAATCTAGAGAGAGAAGAAGGCGAATCTTA
Pyrus pyrifolia cultivar Housui mRNA, clone: TsuENH005_00593m, 5' end sequence.
AB450693.1:131-154
CTAAGATTCGCCTTCTTCTCTCTCTAGATT131TTCATCCATCTAGATCGCTTTCAGTTTGTATTTCAGGGTGGTGTGA
Mdfw2016i02.y1 Mdfw Malus domestica cDNA clone Mdfw2016i02 5' similar to TR:O04060 O04060 LONGEST ORF, mRNA sequence.
CN490281.1:21-44
CTTCTTCTCTCTCTAGATTT21TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
021217ABMA003019HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA003019, mRNA sequence.
CN912016.1:51-74
TAAGATTCGCCTTCTTCTCTCTCTAGATTT51TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
021217ABMA003190HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA003190, mRNA sequence.
CN912107.1:51-74
TAAGATTCGCCTTCTTCTCTCTCTAGATTT51TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
030109ABMA006292HT (ABMA) M9 phloem Malus domestica cDNA clone ABMA006292, mRNA sequence.
CN913980.1:51-74
TAAGATTCGCCTTCTTCTCTCTCTAGATTT51TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
Mdfr3018i24.y1 Mdfr Malus domestica cDNA clone Mdfr3018i24 5' similar to TR:O04060 O04060 LONGEST ORF, mRNA sequence.
CO722709.1:48-71
TAAGATTCGCCTTCTTCTCTCTCTAGATTT48TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
Mdfr3023h21.y1 Mdfr Malus domestica cDNA clone Mdfr3023h21 5' similar to TR:O04060 O04060 LONGEST ORF, mRNA sequence.
CO753374.1:65-88
TAAGATTCGCCTTCTTCTCTCTCTAGATTT65TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
Mdfrt3048l21.y1 Mdfrt Malus domestica cDNA clone Mdfrt3048l21 5' similar to TR:O04060 O04060 LONGEST ORF, mRNA sequence.
CO755094.1:33-56
AAGAATTCGCCTTCTTCTCTCTCTAGATTT33TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
Mdfrt3060g06.y1 Mdfrt Malus domestica cDNA clone Mdfrt3060g06 5' similar to TR:O04060 O04060 LONGEST ORF, mRNA sequence.
CO899393.1:22-45
CCTTCTTCTCTCTCTAGATTT22TTCATCCATCTAGATCGCTTTCAGCTTTATTTGCAGGGTGGTGTGAAAGACGTT
Mdfrt3081l19.y1 Mdfrt Malus domestica cDNA clone Mdfrt3081l19 5' similar to TR:O04060 O04060 LONGEST ORF, mRNA sequence.
CV091625.1:27-50
ATTCGCCTTCTTCTCTCTCTAGATTT27TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
Mdfrt3099g19.y1 Mdfrt Malus domestica cDNA clone Mdfrt3099g19 5' similar to TR:O04060 O04060 LONGEST ORF, mRNA sequence.
CV629087.1:21-44
CTTCTTCTCTCTCTAGATTT21TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
Mdfrt3103n11.y1 Mdfrt Malus domestica cDNA clone Mdfrt3103n11 5' similar to TR:O04060 O04060 LONGEST ORF, mRNA sequence.
CV630602.1:21-44
CTTCTTCTCTCTCTAGATTT21TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
Mdfrt3107d08.y1 Mdfrt Malus domestica cDNA clone Mdfrt3107d08 5' similar to TR:O04060 O04060 LONGEST ORF, mRNA sequence.
CV631478.1:21-44
CTTCTTCTCTCTCTAGATTT21TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
Mdfb8006J10.g1 Apple_EST_Mdfb Malus domestica cDNA similar to ref|NP_568985.1| expressed protein [Arabidopsis thaliana] gb|AAL25551.1| AT5g64130/MHJ24_11 [Arabidopsis thaliana] gb|AAM19915.1| AT5g6413
DR998307.1:30-53
CACGAGGGCCTTCTTCTCTCTCTAGATTT30TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
Mdrtp1004L18.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA similar to ref|NP_568985.1| expressed protein [Arabidopsis thaliana] gb|AAL25551.1| AT5g64130/MHJ24_11 [Arabidopsis thaliana] gb|
DT041460.1:32-55
CGAATTCCGTTGCTGTCGCTCTCTAGATTT32TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
Mdrtp1009L11.g1 Apple_EST_Mdrtp Malus domestica x Malus sieversii cDNA similar to ref|NP_568985.1| expressed protein [Arabidopsis thaliana] gb|AAL25551.1| AT5g64130/MHJ24_11 [Arabidopsis thaliana] gb|
DT041995.1:181-204
TAAGATTCGCCTTCTTCTCTCTCTAGATTT181TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACTT
Mdfwf2089O20.g1 Apple_EST_Mdfwf Malus domestica cDNA 5' similar to ref|NP_568985.1| expressed protein [Arabidopsis thaliana] gb|AAL25551.1| AT5g64130/MHJ24_11 [Arabidopsis thaliana] gb|AAM19915.1| AT5
GO513857.1:134-157
TAAGATTCGCCTTCTTCTCTCTCTAGATTT134TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAAGACGT
TSA: Pyrus communis mRNA, contig: lc2736.
FX611323.1:120-143
TAAGATTCGCCTTCTTCTCTCTCTAGATTT120TTCATCCATCTAGATCGCTTTCAGCTTGTATTTGCAGGGTGGTGTGAAGACGTT
TSA: Pyrus communis mRNA, contig: lc3085.
FX611672.1:8-31
CTAGATT8TTCATCCATCTAGATCGCTTTCAGTTTGTATTTCAGGGTGGTGTGACGACGTTA
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:32205808-32205831
TAAGATTCGCCTTCTTCTCTCTCTAGATTT32205808TTCATCCATCTAGATCGCTTTCAGGTACGAATTCTTGAGTTTTTTTTTTTTTTT
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143374.1:32522983-32523006
TAAGATTCGCCTTCTTCTCTCTCTAGATTT32522983TTCATCCATCTAGATCGCTTTCAGGTACGAATTCTTGAGTTTTTTTTTTTTTTT
Malus hybrid cultivar cultivar SH6 chromosome 17.
CP143391.1:30021372-30021395
TAAGATTCGCCTTCTTCTCTCTCTAGATTT30021372TTCATCCATCTAGATCGCTTTCAGGTACGAATTCTCGAGTTTTTTTTTTTGAAT
Malus sylvestris genome assembly, chromosome: 17.
OU696519.1:32213325-32213348
TAAGATTCGCCTTCTTCTCTCTCTAGATTT32213325TTCATCCATCTAGATCGCTTTCAGGTACGAATTCTTGAGTTTTTTTTTTTTTTG
Malus domestica genome assembly, chromosome: 17.
OU696693.1:32308907-32308930
TAAGATTCGCCTTCTTCTCTCTCTAGATTT32308907TTCATCCATCTAGATCGCTTTCAGGTACGAATTCTTGAGTTTTTTTTTTTTTTT
Malus domestica genome assembly, chromosome: 17.
OU744558.1:33089941-33089964
TAAGATTCGCCTTCTTCTCTCTCTAGATTT33089941TTCATCCATCTAGATCGCTTTCAGGTACGAATTCTTGAGTTTTTTTTTTTTTTT
Malus domestica genome assembly, chromosome: 17.
OU744969.1:32087283-32087306
CTCTAAGATTCGCCTTCTCTCTCTAGATTT32087283TTCATCCATCTAGATCGCTTTCAGGTACGAATTCTTGAGTTTTTTTTTTTTTTG
Malus domestica genome assembly, chromosome: 17.
OU745007.1:32269033-32269056
TAAGATTCGCCTTCTTCTCTCTCTAGATTT32269033TTCATCCATCTAGATCGCTTTCAGGTACGAATTCTTGAGTTTTTTTTTTTTTTT
Crataegus laevigata genome assembly, chromosome: 8.
OY756945.1:37675877-37675900
TAAGATTCGCCTTCTTCTGTCTCTAGATTT37675877TTCATCCATCTAGATCGCTTTCAGGTACGAATTCTCGAGTTTTTTTTTTTTTTT
Crataegus laevigata genome assembly, chromosome: 17.
OY756954.1:7451513-7451536
CTAAGATTCGTCTTCTTCTCTCTCTAGATT7451513TTCATCCATCTAGATCGCTTTCAGGTACGAATTCTCGAGTTTTTATTTTTTGAA
Pyrus communis genome assembly, chromosome: 7.
OY757074.1:23589048-23589071
CTAAGATTCGCCTTCTTCTCTCTCTAGATT23589048TTCATCCATCTAGATCGCTTTCAGGTACGAATTCTCGAGTGTTTTTTTTTTTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTGAAAGCGATCTAGATGGATGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGAAAGCGATCTAGATGGATGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.177 | 0.169 | search_plus_done; http://172.18.8.135:50400/match?q=CTGAAAGCGATCTAGATGGATGAA&k=0&no_gap=0&offset=0&limit=50
0.915 | 0.737 | search_minus_done; http://172.18.8.135:50400/match?q=TTCATCCATCTAGATCGCTTTCAG&k=0&no_gap=0&offset=0&limit=45
0.934 | 0.019 | cgi_end;

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