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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:35:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GR__Ea07B16.r GR__Ea Gossypium raimondii cDNA clone GR__Ea07B16 3', mRNA sequence.
CO088236.1:57-76
ACAAAGAAAATGATAATTAATACCTTTGAT57CTGAAATTACAACAAAGACGATTTTCTTATATTTTATATATATATATATA
GR__Eb0038G17.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0038G17 5', mRNA sequence.
CO107298.1:57-76
ACAAAGAAAATGATAATTAATACAATTGAT57CTGAAATTACAACAAAGACGATTTTCTTATATTTTATATATATATATATA
GR__Eb0048J16.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0048J16 5', mRNA sequence.
CO112126.1:36-55
ACAAAGAAAATGATAATTAATACAATTGAT36CTGAAATTACAACAAAGACGATTTTCTTATATTTTATATATATATATATA
C02_433573.26.S1104162121.anther-SP15865 Normalized cDNA library of anther of upland cotton cultivar CCRI36 Gossypium hirsutum cDNA 3', mRNA sequence.
JK697226.1:63-82
ACAAAGAAAATGATAATTAATACAATTGAT63CTGAAATTACAACAAAGACGATTTTCTTATATTATATATATAGAGAGAGA
Gossypioides kirkii chromosome KI_06.
CP032248.1:22516427-22516446
TAAAAGAAAATCATAATTAATACAATTGAT22516427CTGAAATTACAACAAAGACGATTTTCTTAAGTGTATATATATGTATATAA
Gossypium turneri isolate D10-2 chromosome D10_02.
CP032572.1:16379607-16379626
AGAAAATGATAATTAATTAATACAATTGAT16379607CTGAAATTACAACAAAGACGATTTTCTTATATTTTATTTATATATATGTA
Gossypium herbaceum isolate GPA1alz chromosome 2.
CP106707.1:50543889-50543908
ACAAAGAAAATGATAATTAATACAATTGAT50543889CTGAAATTACAACAAAGACGATTTTCTTATATTATATATATAGAGAGAGA
UFL_299_03 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES817818.1:557-576
TATATATATATATATAAAATATAAGAAAAT557CGTCTTTGTTGTAATTTCAGATCAATTGTATTAATTATCATTTTCTTTGT
GH_TBh026H11r Gossypium hirsutum TM-1 BAC library Gossypium hirsutum genomic, genomic survey sequence.
KO246704.1:333-352
TCTCTCTCTATATATATAATATAAGAAAAT333CGTCTTTGTTGTAATTTCAGATCAATTGTATTAATTATCATTTTCTTTGT
Gossypium herbaceum isolate Zhongcao1 chromosome 2.
CP106694.1:44421592-44421611
TCTCTCTCTATATATATAATATAAGAAAAT44421592CGTCTTTGTTGTAATTTCAGATCAATTGTATTAATTATCATTTTCTTTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTGAAATTACAACAAAGACG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGAAATTACAACAAAGACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.491 | 0.482 | search_plus_done; http://172.18.8.135:50400/match?q=CTGAAATTACAACAAAGACG&k=0&no_gap=0&offset=0&limit=50
0.698 | 0.208 | search_minus_done; http://172.18.8.135:50400/match?q=CGTCTTTGTTGTAATTTCAG&k=0&no_gap=0&offset=0&limit=43
0.700 | 0.002 | cgi_end;

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