GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 03:21:21, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036M17, complete sequence.
AC189325.2:61092-61112
TACATGAGATGAAACTAGTGTAAAATAAAA61092CTGAACGGTCAATTTGTTTGGTAAACTAGAAAACAGTGTTATATGTTACCG
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:54579514-54579534
TTCATGAGATGAAACTAGTAGAAAATAAAA54579514CTGAACGGTCAATTTGTTTGGTAAACTAGAAAACAGTGTTACCGGATAAAT
Brassica napus clone BAC CZ7N2, complete sequence.
KC206509.1:165490-165510
TACATGAGATGAAACTAGTGTAAAATAAAA165490CTGAACGGTCAATTTGTTTGGTAAACTAGAAAACAGTGTTATATGTTACCG
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:2011108-2011128
CGGTAACATATAACACTGTTTTCTAGTTTA2011108CCAAACAAATTGACCGTTCAGTTTTATTTTACACTAGTTTCATCTCATGTA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:1975443-1975463
CGGTAACATATAACACTGTTTTCTAGTTTA1975443CCAAACAAATTGACCGTTCAGTTTTATTTTACACTAGTTTCATCTCATGTA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:2514676-2514696
ATTTATCCGGTAACACTGTTTTCTAGTTTA2514676CCAAACAAATTGACCGTTCAGTTTTATTTTCTACTAGTTTCATCTCATGAA
Brassica rapa genome, scaffold: A01.
LR031571.1:1965975-1965995
CGGTAACATATAACACTGTTTTCTAGTTTA1965975CCAAACAAATTGACCGTTCAGTTTTATTTTACACTAGTTTCATCTCATGTA
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:2449558-2449578
ATTTATCCGGTAACACTGTTTTCTAGTTTA2449558CCAAACAAATTGACCGTTCAGTTTTATTTTCTACTAGTTTCATCTCATGAA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:1966101-1966121
CGGTAACATATAACACTGTTTTCTAGTTTA1966101CCAAACAAATTGACCGTTCAGTTTTATTTTACACTAGTTTCATCTCATGTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGAACGGTCAATTTGTTTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGAACGGTCAATTTGTTTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.104 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=CTGAACGGTCAATTTGTTTGG&k=0&no_gap=0&offset=0&limit=50
0.141 | 0.037 | search_minus_done; http://172.18.8.135:50400/match?q=CCAAACAAATTGACCGTTCAG&k=0&no_gap=0&offset=0&limit=47
0.145 | 0.004 | cgi_end;

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