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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 13:24:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mobula hypostoma genome assembly, chromosome: 1.
OY992592.1:95816825-95816844
GACGTGCTGATTCTAGGCCGTTGCCCCTGA95816825CTGAAGCGTCAGGGAAGAACACGGAACAGTGGGAGCAGCGGATTAGCTGC
Paal uncultured eukaryote cDNA clone AFC0ABA51YO14 from poor sandy soil, mRNA sequence.
FO146297.1:366-385
ACCGTCACCGCCATGGACGTGGTCTATGCT366CTGAAGCGTCAGGGAAGAACCCTGTACGGATTCGGCTTGTAGATTTTTCC
Apis mellifera carnica cDNA ,clone:BQ50006I08, 5' end sequence, expressed in 2 days old and 3 days old whole body isolated from the library of 2 day and 3 day larva that was subtracted by 5 day larva
HX326378.1:308-327
ACTGTAACTGCCATGGATGTAGTTTATGCT308CTGAAGCGTCAGGGAAGAACACTTTATGGATTTGGTGGTTAAATTCTTCT
TSA: Allium fistulosum mRNA, contig: AFU_24235.
FX577960.1:365-384
ACGGTGACGGCCATGGACGTTGTTTATGCT365CTGAAGCGTCAGGGAAGAACCCTTTACGGCTTTGGCGGTTAATACTATTT
TSA: Apis mellifera isotig09426.Amelabd mRNA sequence.
HP468963.1:317-336
ACTGTAACTGCCATGGATGTAGTTTATGCT317CTGAAGCGTCAGGGAAGAACACTTTATGGATTTGGTGGTTAAATTCTTCT
TSA: Apis mellifera isotig03437.Amellarv mRNA sequence.
HP477552.1:311-330
AACTGTAACGCCATGGATGTAGTTTATGCT311CTGAAGCGTCAGGGAAGAACACTTTATGGATTTGGTGGTTAAATTCTTCT
TSA: Apis mellifera isotig03438.Amellarv mRNA sequence.
HP477553.1:313-332
ACTGTAACTGCCATGGATGTAGTTTATGCT313CTGAAGCGTCAGGGAAGAACACTTTATGGATTTGGTGGTTAAATTCTTCT
TSA: Apis mellifera isotig17993.Amelembr mRNA sequence.
HP527527.1:314-333
ACTGTAACTGCCATGGATGTAGTTTATGCT314CTGAAGCGTCAGGGAAGAACACTTTATGGATTTGGTGGTTAAATTCTTCT
TSA: Apis mellifera isotig03331.Ameltest mRNA sequence.
HP545520.1:314-333
ACTGTAACTGCCATGGATGTAGTTTATGCT314CTGAAGCGTCAGGGAAGAACACTTTATGGATTTGGTGGTTAAATTCTTCT
TSA: Allium cepa CUDHLF2_13627 mRNA sequence.
JR856445.1:322-341
ACAGTGACGGCCATGGACGTTGTTTATGCT322CTGAAGCGTCAGGGAAGAACCCTTTACGGCTTTGGCGGTTAATATTATTA
TSA: Allium cepa CUDHLF2_14242 mRNA sequence.
JR857060.1:323-342
ACGGTGACGGCCATGGACGTTGTTTATGCT323CTGAAGCGTCAGGGAAGAACCCTTTACGGCTTTGGTGGTTAATATTATTT
Camelina sativa cultivar CO46 chromosome 15.
CP131545.1:7681355-7681374
TCACTAAGTACCCACCAGCTTATCTAAGTC7681355CTGAAGCGTCAGGGAAGAACCTTCTCATTGGTGCTAACTTCGCTTCTGCA
A.cepa mRNA for histone H4.
X95689.1:138-157
ACGGTGACGGCCATGGACGTTGTTTATGCT138CTGAAGCGTCAGGGAAGAACCCTTTACGGCTTTGGTGGTTAATATTATTT
M.ruginodis mRNA for histone H4.
X91514.1:271-290
ACTGTAACTGCCATGGATGTAGTTTATGCT271CTGAAGCGTCAGGGAAGAACACTCTATGGATTTGGCGGTTAA
Apis mellifera carnica cDNA ,clone:BQ50006I08, 3' end sequence, expressed in 2 days old and 3 days old whole body isolated from the library of 2 day and 3 day larva that was subtracted by 5 day larva
HX372206.1:244-263
AGAAGAATTTAACCACCAAATCCATAAAGT244GTTCTTCCCTGACGCTTCAGAGCATAAACTACATCCATGGCAGTTACAGT
Apis mellifera carnica cDNA ,clone:BQ50008P19, 3' end sequence, expressed in 2 days old and 3 days old whole body isolated from the library of 2 day and 3 day larva that was subtracted by 5 day larva
HX372729.1:249-268
AGAAGAATTTAACCACCAAATCCATAAAGT249GTTCTTCCCTGACGCTTCAGAGCATAAACTACATCCATGGCAGTTACAGT
TSA: Apis mellifera isotig19532.Amelbrova mRNA sequence.
HP503455.1:358-377
AGAAGAATTTAACCACCAAATCCATAAAGT358GTTCTTCCCTGACGCTTCAGAGCATAAACTACATCCATGGCAGTTACAGT
TSA: Apis mellifera isotig25620.Amelova mRNA sequence.
HP578000.1:362-381
AGAAGAATTTAACCACCAAATCCATAAAGT362GTTCTTCCCTGACGCTTCAGAGCATAAACTACATCCATGGCAGTTACAGT
Alisma plantago-aquatica genome assembly, chromosome: 2.
OY856410.1:1465916776-1465916795
TGTCGCAGCCTCGCACAACCCTTCACACTT1465916776GTTCTTCCCTGACGCTTCAGGCACATAGGCGAGTTCAAAGTAAAATAGGA
Caenorhabditis japonica genome assembly, chromosome: IV.
OY754345.1:12733987-12734006
CAGAAGAATTATCCTCCAAATCCGTACAGA12733987GTTCTTCCCTGACGCTTCAGAGCATAGACAACGTCCATTGCGGTGACAGT
Caenorhabditis sinica genome assembly, chromosome: V.
OZ009939.1:12242315-12242334
CAGATGAGTTATCCTCCGAAACCGTAGAGA12242315GTTCTTCCCTGACGCTTCAGGGCGTAGACGACGTCCATAGCGGTGACTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTGAAGCGTCAGGGAAGAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGAAGCGTCAGGGAAGAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.365 | 0.356 | search_plus_done; http://172.18.8.135:50400/match?q=CTGAAGCGTCAGGGAAGAAC&k=0&no_gap=0&offset=0&limit=50
0.650 | 0.285 | search_minus_done; http://172.18.8.135:50400/match?q=GTTCTTCCCTGACGCTTCAG&k=0&no_gap=0&offset=0&limit=36
0.654 | 0.005 | cgi_end;

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