GGGenome | Results

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2025-04-08 18:10:51, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

Lotus japonicus DNA, clone:LjB18b20_f.
AG229470.1:315-334

CAAATAGTATATTATTAAGGGCTCAAAATA315CTGAATAGACAACATCCGGTTCCATTGAAGTCGTAGAGAATGTTGGGAAT

Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:136184836-136184855

CAAATAGTATATTATTAAGGGCTCAAAATA136184836CTGAATAGACAACATCCGGTTCCATTGAAGTCGTAGAGAATGTTGGGAAT

Lotus japonicus genomic DNA, chromosome 1, clone: LjB18B20, BM1229.
AP007915.2:81846-81865

ATTCCCAACATTCTCTACGACTTCAATGGA81846ACCGGATGTTGTCTATTCAGTATTTTGAGCCCTTAATAATATACTATTTG

Lotus japonicus genomic DNA, chromosome 1, clone: LjT17N03, TM1636.
AP008189.2:54398-54417

ATTCCCAACATTCTCTACGACTTCAATGGA54398ACCGGATGTTGTCTATTCAGTATTTTGAGCCCTTAATAATATACTATTTG

Cyprideis torosa.
OB663601.1:9136-9155

ATCCCCGTCTTCGGCAATTCAGAATATTCC9136ACCGGATGTTGTCTATTCAGCGGTAAGTCCTTATACTTGTGTTTACGAAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.008 | 0.008 | search_start;
0.099 | 0.091 | search_plus_done; http://172.18.8.135:50400/match?q=CTGAATAGACAACATCCGGT&k=0&no_gap=0&offset=0&limit=50
0.135 | 0.035 | search_minus_done; http://172.18.8.135:50400/match?q=ACCGGATGTTGTCTATTCAG&k=0&no_gap=0&offset=0&limit=48
0.137 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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