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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
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2025-04-03 12:34:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Homo sapiens chromosome 16 clone RP11-513N24, complete sequence.
AC022164.8:120067-120086
GCTGGGAATGGAAGGATGAACCAGTCACAC120067CTGACTCCTGCTGTCATGGACTTTATATTACAGCTGGAGACAGATGGCAA
Sequence 2671 from patent US 7557201.
GP471674.1:130-149
AACATGAAGGCACTTGATGTAATCCCATTA130CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
Sequence 20223 from patent US 7557201.
GP489226.1:77-96
AACATGAAGGCACTTGATGTAATCGCATTG77CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
Sequence 21143 from patent US 7557201.
GP490146.1:122-141
AACATGAAGGCACTTGATGTAATCCCATTA122CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
GA__Ea0004A08f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0004A08f, mRNA sequence.
BE052450.2:282-301
AACATGAAGGCACTTGATGTAATCCCATTG282CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
GA__Ea0026D23f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0026D23f, mRNA sequence.
BE052576.2:275-294
AACATGAAGGCACTTGATGTAATCCCATTG275CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
GA__Ea0004F11f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ea0004F11f, mRNA sequence.
BE053847.2:173-192
AACATGAAGGCACTTGATGTAATCCCATTG173CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
GA__Eb0024E09f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0024E09f, mRNA sequence.
BF275522.1:459-478
AACATGAAGGCACTTGATGTAATCCCATTG459CTGACTCCTGCTGTCATGGAGAAGATCGAGACAGTTTTTGAAAGCAAGCC
GA__Ed0064D07f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0064D07f, mRNA sequence.
BQ403969.1:541-560
AACATGAAGGCACTTGATGTAATCCCATTG541CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
GA__Ed0106G08f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0106G08f, mRNA sequence.
BQ407449.1:152-171
AACATGAAGGCACTTGATGTAATCCCATTG152CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
G.h.fbr-sw07791 G.h.fbr-sw Gossypium hirsutum cDNA, mRNA sequence.
CO498401.1:151-170
AACATGAAGGCACTTGATGTAATCGCATTG151CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
CM055F01 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR457470.1:446-465
AACATGAAGGCACTTGATGTAATCCCATTA446CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
GH_ON35G14.r GH_ON Gossypium hirsutum cDNA clone GH_ON35G14 3', mRNA sequence.
DT457991.1:840-859
GAACATGAAGGCACTTGATGTAATCCATTA840CTGACTCCTGCTGTCATGGAGAAGATGAGACCGTTTTTCAAAG
EST1064274 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT553634.1:960-979
GACATGAACGCACTTGATGTAATCGCATTG960CTGACTCCTGCTGTCATGGAGAAGA
GH_ONEFM_01-01-20R_G07_InvR_24Mar04_051_F Fiber - 1 day after anthesis Gossypium hirsutum cDNA, mRNA sequence.
DW229664.1:463-482
AACATGAAGGCACTTGATGTAATCGCATTG463CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAGCAAGCCT
GH_TS_02-01-07R_A11_InvR_09Feb04_095_F Stem - 3-5 weeks after planting Gossypium hirsutum cDNA, mRNA sequence.
DW239577.1:419-438
AACATGAAGGCACTTGATGTAATCGCATTG419CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
GH_TMIRS_137_C07_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW509773.1:87-106
AACGTGAATGCACTTGATGTAATCCCATTA87CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
GH_TMIRS_142_A12_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequence.
DW510286.1:725-744
AACATGAAGGCACTTGATGTAATCCCATTA725CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
UFL_313_64 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES812302.1:915-934
GAACATGAAGGCACTTGATGTAATCCATTA915CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTTCAAGCAAGCC
UFL_165_60 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES813758.1:503-522
AACATGAAGGCACTTGATGTAATCCCATTA503CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
UFL_198_27 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES816674.1:62-81
AACATGAAGGCACTTGATGTAATCCCATTA62CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
UFL_179_85 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES818298.1:211-230
CACATGCAGGCACTTGATGTAATCGCATTG211CTGACTCCTGCTGTCATGGAGCATCATTGAGCCAGTTTTTCAAAGCAAGC
UFL_430_19 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES825509.1:379-398
AACATGAAGGCACTTGATGTAATCCCATTA379CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
UFL_203_90 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES828706.1:261-280
AACATGAAGGCACTTGATGTAATCGCATTG261CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
UFL_251_90 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES834449.1:622-641
AACATGAAGGCACTTGATGTAATCGCATTG622CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
UFL_039_72 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES838112.1:504-523
AACATGAAGGCACTTGATGTAATCCCATTA504CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
069B10 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV484891.1:403-422
AACATGAAGGCACTTGATGTAATCCCATTA403CTGACTCCTGCTGTCATGGAGAAGATTGAGACCTGTTTTCAAAGCAAGCC
sg033F11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV494961.1:214-233
AACATGAAGGCACTTGATGTAATCCCATTA214CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
D03_F-28_027 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EX172274.1:367-386
AACATGAAGGCACTTGATGTAATCGCATTG367CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGNTTTTCAAAGCAAGCC
UFL_508_87 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequence.
EY196094.1:915-934
GAACATGAAGGCACTTGATGTAATCCATTA915CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTTCAAGCAAGCC
cembY736 cDNA library from leaves of Gossypium arboreum Gossypium arboreum cDNA clone 140013 3', mRNA sequence.
GE654076.1:481-500
ACATGAAGGCACTTGATGTAAATCCCATTG481CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTTCAAAGCAAGC
EST003435 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 14-A12 5', mRNA sequence.
GR710235.1:203-222
AACATGAAGGCACTTGATGTAATCCCATTA203CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
EST007015 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 33-J14 5', mRNA sequence.
GR713815.1:10-29
ACGCGTCCG10CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGCAATGGGATTACATCA
EST007015 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 33-J14 5', mRNA sequence.
GR713815.1:83-102
TACATCAAGTGCCTTCATGTAATCCCATTG83CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
EST009061 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 41-E14 5', mRNA sequence.
GR715861.1:129-148
AACATGAAGGCACTTGATGTAATCCCATTA129CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
EST009071 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 41-F02 5', mRNA sequence.
GR715871.1:163-182
AACATGAAGGCACTTGATGTAATCCCATTA163CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
EST009345 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 42-E09 5', mRNA sequence.
GR716145.1:450-469
AACATGAAGGCACTTGATGTAATCCCATTA450CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
1P2-3-G11-T3 Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri Narma Gossypium hirsutum cDNA, mRNA sequence.
JG454036.1:435-454
AACATGAAGGCACTTGATGTAATCCCATTA435CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-157H1.
CU930027.2:128029-128048
GGGAAACAGAGGTGAACCAGAGATACACAC128029CTGACTCCTGCTGTCATGGAGATTACAGTATAGTGGAAGACATTGACATG
Gossypium turneri isolate D10-2 chromosome D10_09.
CP032579.1:24975448-24975467
AACATGAAGGCACTTGATGTAATCCCATTA24975448CTGACTCCTGCTGTCATGGAGAAGATTGAGACCGTTTTTCAAAGCAAGCC
Gossypium herbaceum isolate Zhongcao1 chromosome 9.
CP106695.1:25366586-25366605
AACATGAAGGCACTTGATGTAATCCCATTG25366586CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
Gossypium bickii isolate GPG1lz chromosome 10.
CP106713.1:126535333-126535352
AACATGAAGGCACTTGATGTAATCCCATTA126535333CTGACTCCTGCTGTCATGGAGAAGATTGAGACAGTTTTTCAAAGCAAGCC
Fagus sylvatica genome assembly, chromosome: 12.
OU015772.1:13878588-13878607
AACATGAAAGCTATTGATGTCATCCCACTA13878588CTGACTCCTGCTGTCATGGACAAGATTGAGGCTGTAGTTCAAAGCAAGCC
Hibiscus tridactylites genome assembly, chromosome: 4.
OY288268.1:44464724-44464743
AACATGAAAGCACTTGATGTGATCCCATTA44464724CTGACTCCTGCTGTCATGGAGAAGATTGAGGCTGTTGTTCAAAGTAAGCC
Homo sapiens DNA, chromosome 16, nearly complete genome.
AP023476.1:70149515-70149534
TTGCCATCTGTCTCCAGCTGTAATATAAAG70149515TCCATGACAGCAGGAGTCAGGTGTGACTGGTTCATCCTTCCATTCCCAGC
Homo sapiens isolate CHM13 chromosome 16.
CP068262.2:71546415-71546434
TTGCCATCTGTCTCCAGCTGTAATATAAAG71546415TCCATGACAGCAGGAGTCAGGTGTGACTGGTTCATCCTTCCATTCCCAGC
Homo sapiens isolate NA24385 chromosome 16.
CP139527.1:65847460-65847479
TTGCCATCTGTCTCCAGCTGTAATATAAAG65847460TCCATGACAGCAGGAGTCAGGTGTGACTGGTTCATCCTTCCATTCCCAGC
Homo sapiens isolate NA24385 chromosome 16.
CP139550.1:69063462-69063481
TTGCCATCTGTCTCCAGCTGTAATATAAAG69063462TCCATGACAGCAGGAGTCAGGTGTGACTGGTTCATCCTTCCATTCCCAGC
Sus scrofa scrofa breed NS chromosome 15.
CP071566.1:120366926-120366945
CATGTCAATGTCTTCCACTATACTGTAATC120366926TCCATGACAGCAGGAGTCAGGTGTGTATCTCTGGTTCACCTCTGTTTCCC
Sus scrofa genome assembly, chromosome: 15.
OY997222.1:132480292-132480311
CATGTCAATGTCTTCCACTATACTGTAATC132480292TCCATGACAGCAGGAGTCAGGTGTGTATCTCTGGTTCACCTCTGTTTCCC
Conger conger genome assembly, chromosome: 17.
OY741330.1:27585755-27585774
AGACCAGCTGGTGCTACTGGCCCCGGGTAG27585755TCCATGACAGCAGGAGTCAGTCCAAAACACGTGTACCATGGCAGATGTAA
Eukaryotic synthetic construct chromosome 16.
CP034494.1:65725993-65726012
TTGCCATCTGTCTCCAGCTGTAATATAAAG65725993TCCATGACAGCAGGAGTCAGGTGTGACTGGTTCATCCTTCCATTCCCAGC
Eukaryotic synthetic construct chromosome 16.
CP034519.1:65725993-65726012
TTGCCATCTGTCTCCAGCTGTAATATAAAG65725993TCCATGACAGCAGGAGTCAGGTGTGACTGGTTCATCCTTCCATTCCCAGC
GA__Ed0064D07r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0064D07r, mRNA sequence.
BQ412845.1:320-339
GGCTTGCTTTGAAAAACTGTCTCAATCTTC320TCCATGACAGCAGGAGTCAGCAATGGGATTACATCAAGTGCCTTCATGTT
GA__Ed0106G08r Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0106G08r, mRNA sequence.
BQ416083.1:323-342
GGCTTGCTTTGAAAAACTGTCTCAATCTTC323TCCATGACAGCAGGAGTCAGCAATGGGATTACATCAAGTGCCTTCATGTT
GR__Ea46K04.f GR__Ea Gossypium raimondii cDNA clone GR__Ea46K04 5', mRNA sequence.
CO082155.1:256-275
GGCTTGCTTTGAAAAACGGTCTCAATCTTC256TCCATGACAGCAGGAGTCAGTAATGGGATTACATCAAGTGCCTTCATGTT
GR__Ea08F08.r GR__Ea Gossypium raimondii cDNA clone GR__Ea08F08 3', mRNA sequence.
CO089032.1:300-319
GGCTTGCTTTGAAAAACGGTCTCAATCTTC300TCCATGACAGCAGGAGTCAGTAATGGGATTACATCAAGTGCCTTCATGTT
GR__Eb0032A21.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0032A21 5', mRNA sequence.
CO103460.1:273-292
GGCTTGCTTTGAAAAACGGTCTCAATCTTC273TCCATGACAGCAGGAGTCAGTAATGGGATTACATCAAGTGCCTTCATGTT
GR__Eb0044G02.f GR__Eb Gossypium raimondii cDNA clone GR__Eb0044G02 5', mRNA sequence.
CO110329.1:267-286
GGCTTGCTTTGAAAAACGGTCTCAATCTTC267TCCATGACAGCAGGAGTCAGTAATGGGATTACATCAAGGGCCTTCATGTT
Homo sapiens chromosome 16 clone RP11-120P24, WORKING DRAFT SEQUENCE, 4 ordered pieces.
AC009026.7:30026-30045
TTGCCATCTGTCTCCAGCTGTAATATAAAG30026TCCATGACAGCAGGAGTCAGGTGTGACTGGTTCATCCTTCCATTCCCAGC
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-381E16.
FP565904.1:15094-15113
CATGTCAATGTCTTCCACTATACTGTAATC15094TCCATGACAGCAGGAGTCAGGTGTGTATCTCTGGTTCACCTCTGTTTCCC
Gossypioides kirkii chromosome KI_09.
CP032251.1:18633350-18633369
GGCTTGCTTTGAAAAACAGCCTCTATCTTC18633350TCCATGACAGCAGGAGTCAGTAATGGGATTACATCAAGTGCCTTCATGTT
Gossypium raimondii isolate D5-4 chromosome D5_09.
CP032561.1:19095819-19095838
GGCTTGCTTTGAAAAACGGTCTCAATCTTC19095819TCCATGACAGCAGGAGTCAGTAATGGGATTACATCAAGTGCCTTCATGTT
Gossypium herbaceum isolate GPA1alz chromosome 9.
CP106708.1:47873245-47873264
GGCTTGCTTTGAAAAACTGTCTCAATCTTC47873245TCCATGACAGCAGGAGTCAGCAATGGGATTACATCAAGTGCCTTCATGTT
Gossypium bickii isolate GPG1lz chromosome 9.
CP106720.1:55336848-55336867
GGCTTGCTTTGAAAAACTGTCTCAATCTTC55336848TCCATGACAGCAGGAGTCAGTAATGGGATTACATCAAGTGCCTTCATGTT
Gossypium rotundifolium isolate GPK201 chromosome 9.
CP106730.1:68153560-68153579
GGCTTGCTTTGAAAAACTGTCTCAATCTTC68153560TCCATGACAGCAGGAGTCAGTAATGGGATTACATCAAGTGCCTTCATGTT
Hibiscus tridactylites genome assembly, chromosome: 9.
OY288273.1:59094722-59094741
GGCTTACTTTGAACAACAGCCTCGATCTTC59094722TCCATGACAGCAGGAGTCAGTAATGGGATCACATCAAGTGCTTTCATGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTGACTCCTGCTGTCATGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGACTCCTGCTGTCATGGA | format : html | download : | debug :

0.009 | 0.009 | search_start;
2.313 | 2.304 | search_plus_done; http://172.18.8.135:50400/match?q=CTGACTCCTGCTGTCATGGA&k=0&no_gap=0&offset=0&limit=50
2.654 | 0.341 | search_minus_done; http://172.18.8.135:50400/match?q=TCCATGACAGCAGGAGTCAG&k=0&no_gap=0&offset=0&limit=6
2.669 | 0.015 | cgi_end;

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