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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 05:18:03, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Acomys kempi genome assembly, chromosome: 1.
OU015355.1:66925678-66925697
GGAGTGACTGTGGACTTGAAATATATAAGC66925678CTGAGTTCCCCAAACAGGAATATTCCCAGGTAACTACAGCTCAGTACACA
Acomys percivali genome assembly, chromosome: 1.
OU015742.1:68188173-68188192
GGAGTGACTGTGGACTTGAAATATATAAGC68188173CTGAGTTCCCCAAACAGGAATATTCCCAGGTAACCACAGCTCAGTACACA
EST024 cotton fiber suppression subtractive hybridization Library Gossypium hirsutum cDNA clone F207F3, mRNA sequence.
DR176750.1:469-488
AACAACGTGAAGAGTACGAGAAAGAAAAAC469CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
EST066 cotton fiber suppression subtractive hybridization Library Gossypium hirsutum cDNA clone F207F3, mRNA sequence.
DR432354.1:469-488
AACAACGTGAAGAGTACGAGAAAGAAAAAC469CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
EST021 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 1-b11 5', mRNA sequence.
EE592420.1:335-354
AACAACATGAAGAGTACGAGAAAGAAAAAC335CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
EST002342 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 09-L22 5', mRNA sequence.
GR709142.1:310-329
AACAACATGAAGAGTACGAGAAAGAAAAAC310CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
EST004232 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 16-O16 5', mRNA sequence.
GR711032.1:336-355
AACAACATGAAGAGTACGAGAAAGAAAAAC336CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
EST006052 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 23-E20 5', mRNA sequence.
GR712852.1:335-354
AACAACATGAAGAGTACGAGAAAGAAAAAC335CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
EST008602 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 39-I06 5', mRNA sequence.
GR715402.1:168-187
AACAACATGAAGAGTACGAGAAAGAAAAAC168CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
2P1-G4-T3 Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri Narma Gossypium hirsutum cDNA, mRNA sequence.
JG452254.1:111-130
AACAACATGAAGAGTACGAGAAAGAAAAAC111CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
mhczaa0_026974.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_026974.z1, mRNA sequence.
JG838461.1:480-499
AACAACATGAAGAGTACGAGAAAGAAAAAC480CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
G06-G09302183-15-210-6 cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone G06-G09302183-15-210-6, mRNA sequence.
JG838980.1:353-372
AACAACATGAAAAGTACGAGGAAGAAAAAC353CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
D08-G09302149-15-207-8 cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone D08-G09302149-15-207-8, mRNA sequence.
JG839515.1:354-373
AACAACATGAAGAGTACGAGAAAGAAAAAC354CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
mhczaa0_003206.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_003206.z1, mRNA sequence.
JG841851.1:468-487
AACAACATGAAGAGTACGAGAAAGAAAAAC468CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
D08-G09302449-18-231-8 cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone D08-G09302449-18-231-8, mRNA sequence.
JG842152.1:354-373
AACAACATGAAGAGTACGAGAAAGAAAAAC354CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
mhczaa0_000918.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_000918.z1, mRNA sequence.
JG842459.1:479-498
AACAACATGAAGAGTACGAGAAAGAAAAAC479CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
mhczaa0_029974.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_029974.z1, mRNA sequence.
JG844810.1:468-487
AACAACATGAAGAGTACGAGAAAGAAAAAC468CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
mhczaa0_011724.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_011724.z1, mRNA sequence.
JG845354.1:467-486
AACAACATGAAGAGTACGAGAAAGAAAAAC467CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
mhczaa0_022782.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_022782.z1, mRNA sequence.
JG845417.1:473-492
AACAACATGAAGAGTACGAGAAAGAAAAAC473CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
mhczaa0_004360.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_004360.z1, mRNA sequence.
JG847119.1:477-496
AACAACATGAAGAGTACGAGAAAGAAAAAC477CTGAGTTCCCCAAACAGGAAA
mhczaa0_004038.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_004038.z1, mRNA sequence.
JG849615.1:469-488
AACAACATGAAGAGTACGAGAAAGAAAAAC469CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
mhczaa0_003094.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_003094.z1, mRNA sequence.
JG852615.1:458-477
AACAACATGAAGAGTACGAGAAAGAAAAAC458CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
mhczaa0_022712.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_022712.z1, mRNA sequence.
JG852802.1:477-496
AACAACATGAAGAGTACGAGAGAGAAAAAC477CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
mhczaa0_025033.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_025033.z1, mRNA sequence.
JG853032.1:471-490
AACAACATGAAGAGTACGAGAAAGAAAAAC471CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
mhczaa0_020458.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_020458.z1, mRNA sequence.
JG853670.1:478-497
AACAACATGAAGAGTACGAGAAAGAAAAAC478CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
mhczaa0_001976.z1.scf cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone mhczaa0_001976.z1, mRNA sequence.
JG856287.1:474-493
AACAACATGAAGAGTACGAGAAAGAAAAAC474CTGAGTTCCCCAAACAGGAAAAGCCTAGAGAGCACGAGAAACACGAAGTC
A12-G09300758-2-13-12 cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone A12-G09300758-2-13-12, mRNA sequence.
JG856672.1:354-373
AACAACATGAAGAGTACGAGAAAGAAAAAC354CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCATGAGAAACACGAATTC
Gossypium herbaceum isolate Zhongcao1 chromosome 3.
CP106685.1:3790134-3790153
AACAACATGAAGAGTACGAGAAAGAAAAAC3790134CTGAGTTCCCCAAACAGGAAAAGCCTAAAGAGCACGAGAAACACGAAGTC
Dioctria rufipes genome assembly, chromosome: 2.
OZ002741.1:135854615-135854634
AAGTGCACTACAAAAATACTGCTTGTCAAA135854615CTGAGTTCCCCAAACAGGAAATCAGAATCGTTGATGTAGACGAATAACCG
Sciurus vulgaris genome assembly, chromosome: 6.
LR738616.1:3425515-3425534
TCATTTTCTTGATCATCTTTGAATTTGTTC3425515TTCCTGTTTGGGGAACTCAGGAATGATCACCCTCATCCTCTTGGACCCCT
Acomys russatus genome assembly, chromosome: 1.
LR877212.1:120506150-120506169
TGGAATCCACTACGGAGGATACACGCCACC120506150TTCCTGTTTGGGGAACTCAGTTACGTCACCCTTCATCGTTGCTCAGCGAT
2P1-G4-T7 Subtracted cDNA library from Gossypium hirsutum L. variety Bikaneri Narma Gossypium hirsutum cDNA, mRNA sequence.
JG452253.1:672-691
AACTTCGGGTTTCTCGGGCTCTTTAGGCTT672TTCCTGTTTGGGGAACTCAGGTTTTTCTTTCCCGAACTCTTCATGTTGTT
Gossypium herbaceum isolate GPA1alz chromosome 3.
CP106697.1:129140141-129140160
GACTTCGTGTTTCTCGTGCTCTTTAGGCTT129140141TTCCTGTTTGGGGAACTCAGGTTTTTCTTTCTCGTACTCTTCATGTTGTT
Gossypium bickii isolate GPG1lz chromosome 3.
CP106710.1:139940377-139940396
GACTTCGTGTTTCTCGTGCTCTTTAGGCTT139940377TTCCTGTTTGGGGAACTCAGGTTTTTCTTTTTCGTACTCTTCATGTTGTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTGAGTTCCCCAAACAGGAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGAGTTCCCCAAACAGGAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.476 | 2.467 | search_plus_done; http://172.18.8.135:50400/match?q=CTGAGTTCCCCAAACAGGAA&k=0&no_gap=0&offset=0&limit=50
2.694 | 0.219 | search_minus_done; http://172.18.8.135:50400/match?q=TTCCTGTTTGGGGAACTCAG&k=0&no_gap=0&offset=0&limit=21
2.698 | 0.003 | cgi_end;

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