GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 06:34:58, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

46-L108087-1033-121-K11-ccrv IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-121-K11 3', genomic survey sequence.
JY351848.1:357-377
TTCCAGGTTGTTCTTCCCAACTAAAGGGTA357CTGATGCTGAAGTGTGGAGTGGTGAATTCATATTCAGATTTGATGAATAAT
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392547.1:3081962-3081982
TTCCAGGTTGTTCTTCCCAACTAAAGGGTA3081962CTGATGCTGAAGTGTGGAGTGGTGAATTCATATTCAGATTTGATGAATAAT
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392556.1:3296773-3296793
TTCCAGGTTGTTCTTCCCAACTAAAGGGTA3296773CTGATGCTGAAGTGTGGAGTGGTGAATTCATATTCAGATTTGATGAATAAT
E012697-024-021-H11-SP6 MPIZ-ADIS-024-developing root Beta vulgaris cDNA clone 024-021-H11 5-PRIME, mRNA sequence.
BQ592100.1:373-393
ATTATTCATCAAATCTGAATATGAATTCAC373CACTCCACACTTCAGCATCAGTACCCTTTAGTTGGGAAGAACAACCTGGAA
E012698-024-021-H12-SP6 MPIZ-ADIS-024-developing root Beta vulgaris cDNA clone 024-021-H12 5-PRIME, mRNA sequence.
BQ592282.1:375-395
ATTATTCATCAAATCTGAATATGAATTCAC375CACTCCACACTTCAGCATCAGGACCCTTTAGTTGGGAAGAACAACCTGGAA
Giardia intestinalis strain Be-2 chromosome 3.
CP110918.1:1210015-1210035
GTAAAGTTTGAAAGGGTCTATAGCCTGGCC1210015CACTCCACACTTCAGCATCAGATTTACAGTCTTACGTGCTTTGGATCTGTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/CTGATGCTGAAGTGTGGAGTG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGATGCTGAAGTGTGGAGTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.134 | 0.125 | search_plus_done; http://172.18.8.135:50400/match?q=CTGATGCTGAAGTGTGGAGTG&k=0&no_gap=0&offset=0&limit=50
0.204 | 0.070 | search_minus_done; http://172.18.8.135:50400/match?q=CACTCCACACTTCAGCATCAG&k=0&no_gap=0&offset=0&limit=47
0.206 | 0.002 | cgi_end;

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