GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 19:57:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Onychomys torridus genome assembly, chromosome: 5.
LR877192.1:43756364-43756381
TAAGATCTGACTGGCCTCCACCATTTCTAG43756364CTGCAAGAGAGTCTAACCAGTAGATTATTTTGATTGGACACTGTTTTG
Onychomys arenicola genome assembly, chromosome: 5.
OX460351.1:44605466-44605483
TAAGATCTGACTGGCCTCCACCATTTCTAG44605466CTGCAAGAGAGTCTAACCAGTAGATTATTTTGATTGGACACTGTTTTG
Onychomys leucogaster genome assembly, chromosome: 5.
OX460375.1:44391090-44391107
TAAGATCTGACTGGCCTCCACCATTTCTAG44391090CTGCAAGAGAGTCTAACCAGTAGATTATTTTGATTGGACACTGTTTTG
Onychomys leucogaster genome assembly, chromosome: 5.
OX460422.1:44910379-44910396
TAAGATCTGACTGGCCTCCACCATTTCTAG44910379CTGCAAGAGAGTCTAACCAGTAGATTATTTTGATTGGACACTGTTTTG
Onychomys torridus genome assembly, chromosome: 5.
OX460886.1:43756364-43756381
TAAGATCTGACTGGCCTCCACCATTTCTAG43756364CTGCAAGAGAGTCTAACCAGTAGATTATTTTGATTGGACACTGTTTTG
Streptopelia turtur genome assembly, chromosome: 1.
LR594551.2:161536550-161536567
ATGCAGTGTGTGTTTTAAAAGATGAAGACA161536550CTGCAAGAGAGTCTAACCCCTCCTCTTCCTTTCCCCTGCCCAGACTAC
BOMDT53TF BO_2_3_KB Brassica oleracea genomic clone BOMDT53, genomic survey sequence.
BH720446.1:391-408
TTGGTGAACCAGCTTCATATTTGTAGATAA391CTGCAAGAGAGTCTAACCTGAGAGCGAAGGTTCTCGGTTTTGTCCACC
llb02h09.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ064241.1:358-375
TTGGTGAACCAGCTTCATATTTGTAGATAA358CTGCAAGAGAGTCTAACCTGAGAGCGAAGGTTCTCGGTTTTGTCCACC
Salicornia ramosissima genome assembly, chromosome: 5.
OX596236.1:14097180-14097197
TTTGGGCAAGGGTTCTTAATTTGTATGATG14097180CTGCAAGAGAGTCTAACCCCCTAGAAATTGCACCTCGAACTCTAGATA
Onychomys arenicola genome assembly, chromosome: 5.
OX460446.1:45582478-45582495
CAAAACAGTGTCCAATCAAAATAATCTACT45582478GGTTAGACTCTCTTGCAGCTAGAAATGGTGGAGGCCAGTCAGATCTTA
Apteryx australis mantelli genome assembly, scaffold: scaffold27.
LK391419.1:5989858-5989875
CTTGCTTTCCAAAATGTCCAGTAACCTGAT5989858GGTTAGACTCTCTTGCAGTGTGAAAGAAGTGATTTCATACCCTCTTAT
Erpetoichthys calabaricus genome assembly, chromosome: 9.
LR536440.2:29107406-29107423
CTTAGTCTACATCCGAGTTTTGGGAACATG29107406GGTTAGACTCTCTTGCAGTGTATCCTGTCAATTCTGTTTAAATTGTAC
Nesoenas mayeri genome assembly, chromosome: 1.
OY720056.1:57998857-57998874
GTAGTCTGGGCAGAGGAAAGGAAGAGGAGG57998857GGTTAGACTCTCTTGCAGTGTCTTCATCTTTTAAAACACACACTGCAT
BoTo69I02/RE BOTO1 Brassica oleracea genomic, genomic survey sequence.
ET052022.1:284-301
GGTGGACAAAACCGAGAACCTTCGCTCTCA284GGTTAGACTCTCTTGCAGTTATCTACAAATATGA
BOT01-69I2TR BOT01 Brassica oleracea genomic clone BOT01-69I2, genomic survey sequence.
FI719729.1:253-270
GGTGGACAAAACCGAGAACCTTCGCTCTCA253GGTTAGACTCTCTTGCAGTTATCTACAAATATGAAGCTGGTTCACCAA
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:49937811-49937828
GGTGGACAAAACCGAGAACCTTCGCTCTCA49937811GGTTAGACTCTCTTGCAGTTATCTACAAATATGAAGCTGGTTCACCAA
Alisma plantago-aquatica genome assembly, chromosome: 1.
OY856409.1:4266239-4266256
CCCCATTGAAACCTCTCAGGAGAACGCCAA4266239GGTTAGACTCTCTTGCAGGAAGAGAAGGTCTCTAGAGAAAAGAAGGAA
Anaspis maculata genome assembly, chromosome: 7.
OX421967.1:39562460-39562477
ACTCTTAGCGAGGAACATGTCAGCTATTTG39562460GGTTAGACTCTCTTGCAGGACCCTCGTGTGCACTGGGTGCACAATAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTGCAAGAGAGTCTAACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTGCAAGAGAGTCTAACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.264 | 0.255 | search_plus_done; http://172.18.8.135:50400/match?q=CTGCAAGAGAGTCTAACC&k=0&no_gap=0&offset=0&limit=50
0.444 | 0.181 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTAGACTCTCTTGCAG&k=0&no_gap=0&offset=0&limit=41
0.451 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).